fixed multiple template measurements

src/db.ts

@@ -7,7 +7,7 @@ import ChangelogModel from './models/changelog';
 // database urls, prod db url is retrieved automatically
 const TESTING_URL = 'mongodb://localhost/dfopdb_test';
 const DEV_URL = 'mongodb://localhost/dfopdb';
-const debugging = false;
+const debugging = true;
 
 if (process.env.NODE_ENV !== 'production' && debugging) {
   mongoose.set('debug', true);  // enable mongoose debug

src/index.ts

@@ -8,7 +8,6 @@ import api from './api';
 import db from './db';
 import Mail from './helpers/mail';
 
-// TODO: check header, also in UI
 
 // tell if server is running in debug or production environment
 console.info(process.env.NODE_ENV === 'production' ?

src/routes/root.ts

@@ -22,7 +22,6 @@ router.get('/authorized', (req, res) => {
   });
 });
 
-// TODO: evaluate exact changelog functionality (restoring, deleting after time, etc.)
 router.get('/changelog/:timestamp/:page?/:pagesize?', (req, res, next) => {
   if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 

src/routes/sample.spec.ts

@@ -15,9 +15,6 @@ describe('/sample', () => {
   afterEach(done => TestHelper.afterEach(server, done));
   after(done => TestHelper.after(done));
 
-  // TODO: sort, added date filter, has measurements/condition filter
-  // TODO: check if conditions work in sort/fields/filters
-  // TODO: test for numbers as strings in glass_fiber
   describe('GET /samples', () => {
     it('returns all samples', done => {
       TestHelper.request(server, done, {
@@ -298,7 +295,7 @@ describe('/sample', () => {
         done();
       });
     });
-    it('filters a sample property', done => {  // TODO: implement filters
+    it('filters a sample property', done => {
       TestHelper.request(server, done, {
         method: 'get',
         url: '/samples?status[]=new&status[]=validated&fields[]=number&fields[]=type&filters[]=%7B%22mode%22%3A%22eq%22%2C%22field%22%3A%22type%22%2C%22values%22%3A%5B%22processed%22%5D%7D',
@@ -801,7 +798,7 @@ describe('/sample', () => {
     });
   });
 
-  describe('PUT /sample/{id}', () => {  // TODO: fix tests, work on /samples
+  describe('PUT /sample/{id}', () => {
     it('returns the right sample', done => {
       TestHelper.request(server, done, {
         method: 'put',

src/routes/sample.ts

@@ -22,13 +22,6 @@ import globals from '../globals';
 
 const router = express.Router();
 
-// TODO: check added filter
-// TODO: convert filter value to number according to table model
-// TODO: validation for filter parameters
-// TODO: location/device sort/filter
-
-// TODO: think about filter keys with measurement template versions
-
 
 router.get('/samples', async (req, res, next) => {
   if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
@@ -40,12 +33,6 @@ router.get('/samples', async (req, res, next) => {
   if ((filters.fields.find(e => e.indexOf('.' + globals.spectrum.dpt) >= 0) || filters.output !== 'json') &&
     !req.auth(res, ['dev', 'admin'], 'all')) return;
 
-  // TODO: find a better place for these
-  const sampleKeys = ['_id', 'color', 'number', 'type', 'batch', 'added', 'condition', 'material_id', 'note_id',
-    'user_id'];
-
-  // TODO find further optimizations from bachelor thesis
-
   // evaluate sort parameter from 'color-asc' to ['color', 1]
   filters.sort = filters.sort.split('-');
   filters.sort[0] = filters.sort[0] === 'added' ? '_id' : filters.sort[0];  // route added sorting criteria to _id
@@ -123,7 +110,7 @@ router.get('/samples', async (req, res, next) => {
     let sortStartValue = null;
     if (filters['from-id']) {  // from-id specified, fetch values for sorting
       const fromSample = await MeasurementModel.findOne({sample_id: mongoose.Types.ObjectId(filters['from-id'])})
-        .lean().exec().catch(err => {next(err);});  // TODO: what if more than one measurement for sample?
+        .lean().exec().catch(err => {next(err);});
       if (fromSample instanceof Error) return;
       if (!fromSample) {
         return res.status(400).json({status: 'Invalid body format', details: 'from-id not found'});
@@ -149,7 +136,8 @@ router.get('/samples', async (req, res, next) => {
     collection = SampleModel;
     queryPtr[0].$match.$and.push(statusQuery(filters, 'status'));
 
-    if (sampleKeys.indexOf(filters.sort[0]) >= 0) {  // sorting for sample keys
+    // sorting for sample keys
+    if (SampleValidate.sampleKeys.indexOf(filters.sort[0]) >= 0 || /condition\./.test(filters.sort[0])) {
       let sortStartValue = null;
       if (filters['from-id']) {  // from-id specified
         const fromSample = await SampleModel.findById(filters['from-id']).lean().exec().catch(err => {
@@ -168,13 +156,15 @@ router.get('/samples', async (req, res, next) => {
     }
   }
 
-  addFilterQueries(queryPtr, filters.filters.filter(e => sampleKeys.indexOf(e.field) >= 0));  // sample filters
+  addFilterQueries(queryPtr, filters.filters.filter(
+    e => (SampleValidate.sampleKeys.indexOf(e.field) >= 0) || /condition\./.test(e.field))
+  );  // sample filters
 
   let materialQuery = [];  // put material query together separate first to reuse for first-id
   let materialAdded = false;
   if (sortFilterKeys.find(e => /material\./.test(e))) {  //  add material fields
     materialAdded = true;
-    materialQuery.push(  // add material properties  // TODO: project out unnecessary fields
+    materialQuery.push(  // add material properties
       {$lookup: {from: 'materials', localField: 'material_id', foreignField: '_id', as: 'material'}},
       {$addFields: {material: {$arrayElemAt: ['$material', 0]}}}
     );
@@ -198,16 +188,8 @@ router.get('/samples', async (req, res, next) => {
         {$addFields: {'material.group': { $arrayElemAt: ['$material.group.name', 0]}}}
       );
     }
-    // TODO: adapt code to new numbers format
-    // if (sortFilterKeys.find(e => e === 'material.number')) {  // add material number if needed
-    //   materialQuery.push(
-    //     {$addFields: {'material.number': { $arrayElemAt: [
-    //       '$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}
-    //     ]}}}
-    //   );
-    // }
     const specialMFilters = sortFilterKeys.filter(e => /material\./.test(e))
-      .filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) >= 0);  // TODO
+      .filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) >= 0);
     // base material filters
     addFilterQueries(materialQuery, filters.filters.filter(e => specialMFilters.indexOf(e.field) >= 0));
     queryPtr.push(...materialQuery);
@@ -250,8 +232,17 @@ router.get('/samples', async (req, res, next) => {
         ]}}}],
         as: 'measurements'
     }});
-    measurementTemplates.forEach(template => {
-      addMeasurements(queryPtr, template);
+    const groupedMeasurementTemplates = measurementTemplates.reduce((s, e) => {
+      if (s.hasOwnProperty(e.name)) {
+        s[e.name].push(e);
+      }
+      else {
+        s[e.name] = [e];
+      }
+      return s;
+    }, {});
+    Object.values(groupedMeasurementTemplates).forEach(templates => {
+      addMeasurements(queryPtr, templates);
     });
     addFilterQueries(queryPtr, filters.filters
       .filter(e => sortFilterKeys.filter(e => /measurements\./.test(e)).indexOf(e.field) >= 0)
@@ -310,13 +301,6 @@ router.get('/samples', async (req, res, next) => {
       {$addFields: {'material.group': { $arrayElemAt: ['$material.group.name', 0]}}}
     );
   }
-  // if (fieldsToAdd.indexOf('material.number') >= 0) {  // add material number if needed  // TODO
-  //   queryPtr.push(
-  //     {$addFields: {'material.number': {
-  //       $arrayElemAt: ['$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}]
-  //     }}}
-  //   );
-  // }
 
   let measurementFieldsFields: string[] = _.uniq(
     fieldsToAdd.filter(e => /measurements\./.test(e)).map(e => e.split('.')[1])
@@ -328,8 +312,8 @@ router.get('/samples', async (req, res, next) => {
     if (measurementTemplates.length < measurementFieldsFields.length) {
       return res.status(400).json({status: 'Invalid body format', details: 'Measurement key not found'});
     }
-    // use different lookup methods with and without spectrum for the best performance
-    if (fieldsToAdd.find(e => e.indexOf(globals.spectrum.spectrum + '.') >= 0)) {
+    // use different lookup methods with and without dpt for the best performance
+    if (fieldsToAdd.find(e => e.indexOf(globals.spectrum.spectrum + '.' + globals.spectrum.dpt) >= 0)) {  // with dpt
       queryPtr.push(
         {$lookup: {from: 'measurements', localField: '_id', foreignField: 'sample_id', as: 'measurements'}}
       );
@@ -344,21 +328,23 @@ router.get('/samples', async (req, res, next) => {
           as: 'measurements'
         }});
     }
-    measurementTemplates.forEach(template => {
-      addMeasurements(queryPtr, template);
-      if (measurementFieldsFields.find(e => e === globals.spectrum.spectrum)) {
-        queryPtr.push({$unwind: '$' + globals.spectrum.spectrum});
+    const groupedMeasurementTemplates = measurementTemplates.reduce((s, e) => {
+      if (s.hasOwnProperty(e.name)) {
+        s[e.name].push(e);
       }
+      else {
+        s[e.name] = [e];
+      }
+      return s;
+    }, {});
+    Object.values(groupedMeasurementTemplates).forEach(templates => {
+      addMeasurements(queryPtr, templates);
     });
     queryPtr.push({$project: {measurements: 0}});
   }
 
   const projection = filters.fields.map(e => e.replace('measurements.', ''))
     .reduce((s, e) => {s[e] = true; return s; }, {});
-  if (filters.fields.indexOf('added') >= 0) {  // add added date  // TODO: upgrade MongoDB version or find alternative
-    // projection.added = {$toDate: '$_id'};
-    // projection.added = { $convert: { input: '$_id', to: "date" } }
-  }
   if (filters.fields.indexOf('_id') < 0 && filters.fields.indexOf('added') < 0) {  // disable _id explicitly
     projection._id = false;
   }
@@ -781,12 +767,13 @@ function customFieldsChange (fields, amount, req) {  // update custom_fields and
 
 function sortQuery(filters, sortKeys, sortStartValue) {  // sortKeys = ['primary key', 'secondary key']
   if (filters['from-id']) {  // from-id specified
+    const ssv = sortStartValue !== undefined;  // if value is not given, match for existence
     if ((filters['to-page'] === 0 && filters.sort[1] === 1) || (filters.sort[1] * filters['to-page'] > 0)) {  // asc
       return [
         {$match: {$or: [
-          {[sortKeys[0]]: {$gt: sortStartValue}},
+          {[sortKeys[0]]: ssv ? {$gt: sortStartValue} : {$exists: true}},
           {$and: [
-            {[sortKeys[0]]: sortStartValue},
+            {[sortKeys[0]]: ssv ? sortStartValue : {$exists: false}},
             {[sortKeys[1]]: {$gte: new mongoose.Types.ObjectId(filters['from-id'])}}
           ]}
         ]}},
@@ -795,9 +782,9 @@ function sortQuery(filters, sortKeys, sortStartValue) {  // sortKeys = ['primary
     } else {
       return [
         {$match: {$or: [
-          {[sortKeys[0]]: {$lt: sortStartValue}},
+          {[sortKeys[0]]: ssv ? {$lt: sortStartValue} : {$exists: false}},
           {$and: [
-            {[sortKeys[0]]: sortStartValue},
+            {[sortKeys[0]]: ssv ? sortStartValue : {$exists: true}},
             {[sortKeys[1]]: {$lte: new mongoose.Types.ObjectId(filters['from-id'])}}
           ]}
         ]}},
@@ -834,20 +821,25 @@ function filterQueries (filters) {
   });
 }
 
-// add measurements as property [template.name], if one result, array is reduced to direct values
-function addMeasurements(queryPtr, template) {
+// add measurements as property [template.name], if one result, array is reduced to direct values. All given templates
+// must have the same name
+function addMeasurements(queryPtr, templates) {
   queryPtr.push(
-    {$addFields: {[template.name]: {$let: {vars: {
+    {$addFields: {[templates[0].name]: {$let: {vars: {
       arr: {$filter: {
-        input: '$measurements', cond: {$eq: ['$$this.measurement_template', mongoose.Types.ObjectId(template._id)]}
+        input: '$measurements', cond: {$in: [
+          '$$this.measurement_template',
+          templates.map(e => mongoose.Types.ObjectId(e._id))
+        ]}
       }}},
       in: {$cond: [{$lte: [{$size: '$$arr'}, 1]}, {$arrayElemAt: ['$$arr', 0]}, '$$arr']}
     }}}},
-    {$addFields: {[template.name]: {$cond: [
-      '$' + template.name + '.values',
-      '$' + template.name + '.values',
-      template.parameters.reduce((s, e) => {s[e.name] = null; return s;}, {})
-    ]}}}
+    {$addFields: {[templates[0].name]: {$cond: [
+      '$' + templates[0].name + '.values',
+      '$' + templates[0].name + '.values',
+      templates[0].parameters.reduce((s, e) => {s[e.name] = null; return s;}, {})
+    ]}}},
+    {$unwind: '$' + templates[0].name}
   );
 }
 

src/routes/template.spec.ts

@@ -4,7 +4,6 @@ import TemplateConditionModel from '../models/condition_template';
 import TemplateMeasurementModel from '../models/measurement_template';
 import TestHelper from "../test/helper";
 
-// TODO: method to return only latest template versions -> rework frontend accordingly
 
 describe('/template', () => {
   let server;

src/routes/user.ts

@@ -81,7 +81,6 @@ router.put('/user:username([/](?!key|new).?*|/?)', async (req, res, next) => {
   });
 });
 
-// TODO: only possible if no data is linked to user, otherwise change status, etc.
 // this path matches /user, /user/ and /user/xxx, but not /user/key or user/new.
 // See https://forbeslindesay.github.io/express-route-tester/ for the generated regex
 router.delete('/user:username([/](?!key|new).?*|/?)', (req, res, next) => {

src/routes/validate/sample.ts

@@ -6,6 +6,7 @@ import MaterialValidate from './material';
 import MeasurementValidate from './measurement';
 import globals from '../../globals';
 
+
 export default class SampleValidate {
   private static sample = {
     number: Joi.string()
@@ -56,6 +57,19 @@ export default class SampleValidate {
       .valid(...Object.values(globals.status))
   };
 
+  static readonly sampleKeys = [  // keys which can be found in the sample directly
+    '_id',
+    'color',
+    'number',
+    'type',
+    'batch',
+    'added',
+    'condition',
+    'material_id',
+    'note_id',
+    'user_id'
+  ];
+
   private static sortKeys = [
     '_id',
     'color',
@@ -68,6 +82,7 @@ export default class SampleValidate {
     'material.supplier',
     'material.group',
     'material.properties.*',
+    'condition.*',
     `measurements.(?!${globals.spectrum.spectrum}.${globals.spectrum.dpt})*`
   ];
 
@@ -189,7 +204,7 @@ export default class SampleValidate {
               });
               field = field.replace('material.', '').split('.')[0];
             }
-            else if (/measurements\./.test(field)) {
+            else if (/measurements\./.test(field) || /condition\./.test(field)) {
               validator = Joi.object({
                 value: Joi.alternatives()
                   .try(

src/routes/validate/template.ts

@@ -1,7 +1,6 @@
 import Joi from 'joi';
 import IdValidate from './id';
 
-// TODO: do not allow a . in the name !!!
 export default class TemplateValidate {
   private static template = {
     name: Joi.string()