banana/definma-api
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added notes.comment field and filter

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This commit is contained in:
VLE2FE
2020-08-24 12:37:19 +02:00
parent 3fbd6ccec3
commit 2c250e0111
6 changed files with 139 additions and 10 deletions
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39
src/routes/sample.spec.ts
View File

@@ -402,6 +402,45 @@ describe('/sample', () => {
done();
});
});
it('filters for empty comments', done => {
TestHelper.request(server, done, {
method: 'get',
url: '/samples?status[]=new&status[]=validated&fields[]=number&fields[]=notes.comment&filters[]=%7B%22mode%22%3A%22in%22%2C%22field%22%3A%22notes.comment%22%2C%22values%22%3A%5Bnull%2C%22%22%5D%7D',
auth: {basic: 'janedoe'},
httpStatus: 200
}).end((err, res) => {
if (err) return done(err);
const json = require('../test/db.json');
should(res.body).have.lengthOf(
json.collections.samples
.filter(e => e.status !== 'deleted')
.filter(e => e.note_id === null || json.collections.notes.find(el => el._id.toString() == e.note_id.toString()).comment === '')
.length
);
should(res.body).matchEach(sample => {
should(sample.notes.comment).be.equalOneOf(null, '');
});
done();
});
});
it('returns comment fields', done => {
TestHelper.request(server, done, {
method: 'get',
url: '/samples?status[]=new&status[]=validated&fields[]=number&fields[]=notes.comment',
auth: {basic: 'janedoe'},
httpStatus: 200
}).end((err, res) => {
if (err) return done(err);
console.log(res.body);
const json = require('../test/db.json');
should(res.body).have.lengthOf(json.collections.samples.filter(e => e.status !== 'deleted').length);
should(res.body).matchEach(sample => {
should(sample).have.only.keys('number', 'notes');
should(sample.notes).have.only.keys('comment');
});
done();
});
});
it('rejects returning spectral data for a write user', done => {
TestHelper.request(server, done, {
method: 'get',

23
src/routes/sample.ts
View File

@@ -255,6 +255,11 @@ router.get('/samples', async (req, res, next) => {
); // measurement filters
}
if (sortFilterKeys.find(e => e === 'notes.comment')) {
addNotes(queryPtr);
addFilterQueries(queryPtr, filters.filters.filter(e => e.field === 'notes.comment'));
}
// count total number of items before $skip and $limit, only works when from-id is not specified and spectra are not
// included
if (!filters.fields.find(e =>
@@ -279,11 +284,8 @@ router.get('/samples', async (req, res, next) => {
&& e !== filters.sort[0] // field was not in sort
);
if (fieldsToAdd.find(e => e === 'notes')) { // add notes
queryPtr.push(
{$lookup: {from: 'notes', localField: 'note_id', foreignField: '_id', as: 'notes'}},
{$addFields: {notes: { $arrayElemAt: ['$notes', 0]}}}
);
if (fieldsToAdd.find(e => /^notes(\..+|$)/m.test(e))) { // add notes
addNotes(queryPtr);
}
if (fieldsToAdd.find(e => /material\./.test(e)) && !materialAdded) { // add material, was not added already
@@ -857,6 +859,17 @@ function addMeasurements(queryPtr, templates) {
);
}
function addNotes(queryPtr) { // add note fields with default, if no notes are found
queryPtr.push(
{$lookup: {from: 'notes', localField: 'note_id', foreignField: '_id', as: 'notes'}},
{$addFields: {notes: {$cond: [
{'$arrayElemAt': ['$notes', 0]},
{'$arrayElemAt': ['$notes', 0]},
{comment: null, sample_references: []}
]}}}
);
}
function dateToOId (date) { // convert date to ObjectId
return mongoose.Types.ObjectId(Math.floor(date / 1000).toString(16) + '0000000000000000');
}

2
src/routes/user.ts
View File

@@ -65,7 +65,7 @@ router.put('/user:username([/](?!key|new).?*|/?)', async (req, res, next) => {
await UserModel.findOneAndUpdate({name: username}, user, {new: true}).log(req).lean().exec( (err, data:any) => {
if (err) return next(err);
if (data) {
if (data.mail !== oldUserData.email) { // mail address was changed, send notice to old address
if (data.email !== oldUserData.email) { // mail address was changed, send notice to old address
Mail.send(oldUserData.email, 'Email change in your DeFinMa database account',
'Hi, <br><br> Your email address of your DeFinMa account was changed to ' + data.mail +
'<br><br>If you actually did this, just delete this email.' +

12
src/routes/validate/sample.ts
View File

@@ -28,7 +28,8 @@ export default class SampleValidate {
notes: Joi.object({
comment: Joi.string()
.max(512)
.allow(''),
.allow('')
.allow(null),
sample_references: Joi.array()
.items(Joi.object({
@@ -78,6 +79,7 @@ export default class SampleValidate {
'batch',
'added',
'status',
'notes.comment',
'material.name',
'material.supplier',
'material.group',
@@ -196,6 +198,7 @@ export default class SampleValidate {
data.filters[i] = decodeURIComponent(data.filters[i]);
}
catch (ignore) {}
console.log(data.filters[i]);
data.filters[i] = JSON.parse(data.filters[i]);
data.filters[i].values = data.filters[i].values.map(e => { // validate filter values
if (e === null) { // null values are always allowed
@@ -223,11 +226,14 @@ export default class SampleValidate {
});
field = 'value';
}
else if (field === 'notes.comment') {
field = 'comment';
validator = this.sample.notes
}
else {
validator = Joi.object(this.sample);
}
const {value, error} = validator.validate({[field]: e});
console.log(error);
if (error) throw error; // reject invalid values
return value[field];
});
@@ -260,7 +266,7 @@ export default class SampleValidate {
new RegExp('^(' + this.fieldKeys.join('|').replace(/\./g, '\\.').replace(/\*/g, '.+') + ')$', 'm')
).messages({'string.pattern.base': 'Invalid filter field name'}),
values: Joi.array().items(Joi.alternatives().try(
Joi.string().max(128), Joi.number(), Joi.boolean(), Joi.date().iso(), Joi.object(), null
Joi.string().max(128).allow(''), Joi.number(), Joi.boolean(), Joi.date().iso(), Joi.object(), null
)).min(1)
})).default([])
}).with('to-page', 'page-size').validate(data);