Archived
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Merge pull request #30 in ~VLE2FE/definma-api from develop to master

* commit 'c6f5186f7ea8bc933a613420fff59b4a83ff2f19':
  debug
  fixed multiple template measurements
  model routes
This commit is contained in:
Veit Lukas (PEA4-Fe) 2020-08-16 20:02:45 +02:00
commit 4fd5ab13d1
17 changed files with 351 additions and 87 deletions

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@ -37,6 +37,9 @@
<w>lati</w> <w>lati</w>
<w>lyucy</w> <w>lyucy</w>
<w>materialnumber</w> <w>materialnumber</w>
<w>modela</w>
<w>modelb</w>
<w>modelx</w>
<w>nvmrc</w> <w>nvmrc</w>
<w>oldpass</w> <w>oldpass</w>
<w>opblock</w> <w>opblock</w>

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@ -2,7 +2,7 @@
parameters: parameters:
- $ref: 'api.yaml#/components/parameters/Name' - $ref: 'api.yaml#/components/parameters/Name'
get: get:
summary: TODO get model data by name summary: get model data by name
description: 'Auth: all, levels: dev, admin' description: 'Auth: all, levels: dev, admin'
tags: tags:
- /model - /model
@ -22,14 +22,14 @@
$ref: 'api.yaml#/components/responses/404' $ref: 'api.yaml#/components/responses/404'
500: 500:
$ref: 'api.yaml#/components/responses/500' $ref: 'api.yaml#/components/responses/500'
put: post:
summary: TODO add/replace model data by name summary: add/replace model data by name
description: 'Auth: all, levels: dev, admin' description: 'Auth: all, levels: dev, admin'
tags: tags:
- /model - /model
requestBody: requestBody:
required: true required: true
description: binary model data description: binary model data, Content-Type header must be set to application/octet-stream
content: content:
application/json: application/json:
schema: schema:
@ -38,18 +38,14 @@
responses: responses:
200: 200:
$ref: 'api.yaml#/components/responses/Ok' $ref: 'api.yaml#/components/responses/Ok'
400:
$ref: 'api.yaml#/components/responses/400'
401: 401:
$ref: 'api.yaml#/components/responses/401' $ref: 'api.yaml#/components/responses/401'
403: 403:
$ref: 'api.yaml#/components/responses/403' $ref: 'api.yaml#/components/responses/403'
404:
$ref: 'api.yaml#/components/responses/404'
500: 500:
$ref: 'api.yaml#/components/responses/500' $ref: 'api.yaml#/components/responses/500'
delete: delete:
summary: TODO delete model data summary: delete model data
description: 'Auth: basic, levels: dev, admin' description: 'Auth: basic, levels: dev, admin'
tags: tags:
- /model - /model

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@ -9,8 +9,8 @@ const _ = require('lodash');
const stages = { const stages = {
materials: true, materials: true,
samples: true, samples: false,
dpt: true dpt: false
} }
const docs = [ const docs = [
@ -30,8 +30,8 @@ const docs = [
const errors = []; const errors = [];
const nmDocs = 'C:\\Users\\vle2fe\\Documents\\Data\\All_200807\\nmDocs'; // NormMaster Documents const nmDocs = 'C:\\Users\\vle2fe\\Documents\\Data\\All_200807\\nmDocs'; // NormMaster Documents
const dptFiles = 'C:\\Users\\vle2fe\\Documents\\Data\\All_200807\\DPT'; // Spectrum files const dptFiles = 'C:\\Users\\vle2fe\\Documents\\Data\\All_200807\\DPT'; // Spectrum files
// const host = 'http://localhost:3000'; const host = 'http://localhost:3000';
const host = 'https://definma-api.apps.de1.bosch-iot-cloud.com'; // const host = 'https://definma-api.apps.de1.bosch-iot-cloud.com';
const requiredProperties = ['samplenumber','materialnumber','materialname','supplier','reinforcementmaterial','material','granulate/part','color','charge/batch','comments']; const requiredProperties = ['samplenumber','materialnumber','materialname','supplier','reinforcementmaterial','material','granulate/part','color','charge/batch','comments'];
dict = { // dictionary dict = { // dictionary
'Granulat': 'granulate', 'Granulat': 'granulate',
@ -62,7 +62,7 @@ async function main() {
for (let i in docs) { for (let i in docs) {
await importCsv(docs[i]); await importCsv(docs[i]);
await allMaterials(); await allMaterials();
await saveMaterials(); // await saveMaterials();
} }
fs.writeFileSync('./data_import/numberToColor.json', JSON.stringify(numberToColor)); fs.writeFileSync('./data_import/numberToColor.json', JSON.stringify(numberToColor));
} }
@ -651,6 +651,9 @@ async function allMaterials() {
// process all samples // process all samples
for (let index in data) { for (let index in data) {
let sample = data[index]; let sample = data[index];
if (sample['materialname'].replace(/\s+/g, '') === 'Latamid66H2G30') {
console.log(sample);
}
if (sample['supplier'] === '') { // empty supplier fields if (sample['supplier'] === '') { // empty supplier fields
sample['supplier'] = 'unknown'; sample['supplier'] = 'unknown';
} }
@ -676,7 +679,7 @@ async function allMaterials() {
} }
} }
else { // new material else { // new material
console.info(`MATERIAL LOAD ${index}/${data.length} ${sample['materialname']}`); // console.info(`MATERIAL LOAD ${index}/${data.length} ${sample['materialname']}`);
materials[sample['materialname']] = { materials[sample['materialname']] = {
name: trim(sample['materialname']), name: trim(sample['materialname']),
supplier: trim(sample['supplier']), supplier: trim(sample['supplier']),

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@ -7,7 +7,7 @@ import ChangelogModel from './models/changelog';
// database urls, prod db url is retrieved automatically // database urls, prod db url is retrieved automatically
const TESTING_URL = 'mongodb://localhost/dfopdb_test'; const TESTING_URL = 'mongodb://localhost/dfopdb_test';
const DEV_URL = 'mongodb://localhost/dfopdb'; const DEV_URL = 'mongodb://localhost/dfopdb';
const debugging = false; const debugging = true;
if (process.env.NODE_ENV !== 'production' && debugging) { if (process.env.NODE_ENV !== 'production' && debugging) {
mongoose.set('debug', true); // enable mongoose debug mongoose.set('debug', true); // enable mongoose debug

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@ -8,7 +8,6 @@ import api from './api';
import db from './db'; import db from './db';
import Mail from './helpers/mail'; import Mail from './helpers/mail';
// TODO: check header, also in UI
// tell if server is running in debug or production environment // tell if server is running in debug or production environment
console.info(process.env.NODE_ENV === 'production' ? console.info(process.env.NODE_ENV === 'production' ?
@ -111,9 +110,10 @@ if (process.env.NODE_ENV !== 'production') {
app.use('/', require('./routes/root')); app.use('/', require('./routes/root'));
app.use('/', require('./routes/sample')); app.use('/', require('./routes/sample'));
app.use('/', require('./routes/material')); app.use('/', require('./routes/material'));
app.use('/', require('./routes/template'));
app.use('/', require('./routes/user'));
app.use('/', require('./routes/measurement')); app.use('/', require('./routes/measurement'));
app.use('/', require('./routes/template'));
app.use('/', require('./routes/model'));
app.use('/', require('./routes/user'));
// static files // static files
app.use('/static', express.static('static')); app.use('/static', express.static('static'));

8
src/models/model.ts Normal file
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@ -0,0 +1,8 @@
import mongoose from 'mongoose';
const ModelSchema = new mongoose.Schema({
name: {type: String, index: {unique: true}},
data: Buffer
});
export default mongoose.model<any, mongoose.Model<any, any>>('model', ModelSchema);

197
src/routes/model.spec.ts Normal file
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@ -0,0 +1,197 @@
import should from 'should/as-function';
import ModelModel from '../models/model';
import TestHelper from "../test/helper";
describe('/model', () => {
let server;
before(done => TestHelper.before(done));
beforeEach(done => server = TestHelper.beforeEach(server, done));
afterEach(done => TestHelper.afterEach(server, done));
after(done => TestHelper.after(done));
describe('GET /model/{name}', (() => {
it('returns the binary data', done => {
TestHelper.request(server, done, {
method: 'get',
url: '/model/modela',
auth: {basic: 'admin'},
httpStatus: 200,
contentType: 'application/octet-stream; charset=utf-8',
}).end((err, res) => {
if (err) return done (err);
should(res.body.toString()).be.eql('binary data');
done();
});
});
it('returns the binary data for an API key', done => {
TestHelper.request(server, done, {
method: 'get',
url: '/model/modela',
auth: {key: 'admin'},
httpStatus: 200,
contentType: 'application/octet-stream; charset=utf-8',
}).end((err, res) => {
if (err) return done (err);
should(res.body.toString()).be.eql('binary data');
done();
});
});
it('returns 404 for an unknown name', done => {
TestHelper.request(server, done, {
method: 'get',
url: '/model/modelx',
auth: {basic: 'admin'},
httpStatus: 404
})
});
it('rejects requests from a write user', done => {
TestHelper.request(server, done, {
method: 'get',
url: '/model/modela',
auth: {basic: 'janedoe'},
httpStatus: 403
})
});
it('rejects unauthorized requests', done => {
TestHelper.request(server, done, {
method: 'get',
url: '/model/modela',
httpStatus: 401
})
});
}));
describe('POST /model/{name}', () => {
it('stores the data', done => {
TestHelper.request(server, done, {
method: 'post',
url: '/model/modelb',
auth: {basic: 'admin'},
httpStatus: 200,
reqContentType: 'application/octet-stream',
req: 'another binary data'
}).end((err, res) => {
if (err) return done (err);
should(res.body).be.eql({status: 'OK'});
ModelModel.find({name: 'modelb'}).lean().exec((err, data) => {
if (err) return done (err);
should(data).have.lengthOf(1);
should(data[0]).have.only.keys('_id', 'name', 'data', '__v');
should(data[0]).have.property('name', 'modelb');
should(data[0].data.buffer.toString()).be.eql('another binary data');
done();
});
});
});
it('stores the data with an API key', done => {
TestHelper.request(server, done, {
method: 'post',
url: '/model/modelb',
auth: {key: 'admin'},
httpStatus: 200,
reqContentType: 'application/octet-stream',
req: 'another binary data'
}).end((err, res) => {
if (err) return done (err);
should(res.body).be.eql({status: 'OK'});
ModelModel.find({name: 'modelb'}).lean().exec((err, data) => {
if (err) return done (err);
should(data).have.lengthOf(1);
should(data[0]).have.only.keys('_id', 'name', 'data', '__v');
should(data[0]).have.property('name', 'modelb');
should(data[0].data.buffer.toString()).be.eql('another binary data');
done();
});
});
});
it('overwrites existing data', done => {
TestHelper.request(server, done, {
method: 'post',
url: '/model/modela',
auth: {basic: 'admin'},
httpStatus: 200,
reqContentType: 'application/octet-stream',
req: 'another binary data'
}).end((err, res) => {
if (err) return done (err);
should(res.body).be.eql({status: 'OK'});
ModelModel.find({name: 'modela'}).lean().exec((err, data) => {
if (err) return done (err);
should(data).have.lengthOf(1);
should(data[0]).have.only.keys('_id', 'name', 'data', '__v');
should(data[0]).have.property('name', 'modela');
should(data[0].data.buffer.toString()).be.eql('another binary data');
done();
});
});
});
it('rejects requests from a write user', done => {
TestHelper.request(server, done, {
method: 'post',
url: '/model/modelb',
auth: {basic: 'janedoe'},
httpStatus: 403,
req: 'another binary data'
});
});
it('rejects unauthorized requests', done => {
TestHelper.request(server, done, {
method: 'post',
url: '/model/modelb',
httpStatus: 401,
req: 'another binary data'
});
});
});
describe('DELETE /model/{name}', () => {
it('deletes the data', done => {
TestHelper.request(server, done, {
method: 'delete',
url: '/model/modela',
auth: {basic: 'admin'},
httpStatus: 200
}).end((err, res) => {
if (err) return done(err);
should(res.body).be.eql({status: 'OK'});
ModelModel.find({name: 'modela'}).lean().exec((err, data) => {
if (err) return done(err);
should(data).have.lengthOf(0);
done();
});
});
});
it('returns 404 for an unknown name', done => {
TestHelper.request(server, done, {
method: 'delete',
url: '/model/modelx',
auth: {basic: 'admin'},
httpStatus: 404
});
});
it('rejects an API key', done => {
TestHelper.request(server, done, {
method: 'delete',
url: '/model/modela',
auth: {key: 'admin'},
httpStatus: 401
});
});
it('rejects a write user', done => {
TestHelper.request(server, done, {
method: 'delete',
url: '/model/modela',
auth: {basic: 'janedoe'},
httpStatus: 403
});
});
it('rejects an unauthorized request', done => {
TestHelper.request(server, done, {
method: 'delete',
url: '/model/modela',
httpStatus: 401
});
});
});
});

47
src/routes/model.ts Normal file
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@ -0,0 +1,47 @@
import express from 'express';
import bodyParser from 'body-parser';
import ModelModel from '../models/model';
const router = express.Router();
router.get('/model/:name', (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'all')) return;
ModelModel.findOne({name: req.params.name}).lean().exec((err, data) => {
if (err) return next(err);
if (data) {
res.set('Content-Type', 'application/octet-stream');
res.send(data.data.buffer);
}
else {
res.status(404).json({status: 'Not found'});
}
});
});
router.post('/model/:name', bodyParser.raw({limit: '500kb'}), (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'all')) return;
ModelModel.replaceOne({name: req.params.name}, {name: req.params.name, data: req.body}).setOptions({upsert: true})
.lean().exec(err => {
if (err) return next(err);
res.json({status: 'OK'});
});
});
router.delete('/model/:name', (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
ModelModel.findOneAndDelete({name: req.params.name}).lean().exec((err, data) => {
if (err) return next(err);
if (data) {
res.json({status: 'OK'});
}
else {
res.status(404).json({status: 'Not found'});
}
});
});
module.exports = router;

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@ -22,7 +22,6 @@ router.get('/authorized', (req, res) => {
}); });
}); });
// TODO: evaluate exact changelog functionality (restoring, deleting after time, etc.)
router.get('/changelog/:timestamp/:page?/:pagesize?', (req, res, next) => { router.get('/changelog/:timestamp/:page?/:pagesize?', (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'basic')) return; if (!req.auth(res, ['dev', 'admin'], 'basic')) return;

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@ -15,9 +15,6 @@ describe('/sample', () => {
afterEach(done => TestHelper.afterEach(server, done)); afterEach(done => TestHelper.afterEach(server, done));
after(done => TestHelper.after(done)); after(done => TestHelper.after(done));
// TODO: sort, added date filter, has measurements/condition filter
// TODO: check if conditions work in sort/fields/filters
// TODO: test for numbers as strings in glass_fiber
describe('GET /samples', () => { describe('GET /samples', () => {
it('returns all samples', done => { it('returns all samples', done => {
TestHelper.request(server, done, { TestHelper.request(server, done, {
@ -298,7 +295,7 @@ describe('/sample', () => {
done(); done();
}); });
}); });
it('filters a sample property', done => { // TODO: implement filters it('filters a sample property', done => {
TestHelper.request(server, done, { TestHelper.request(server, done, {
method: 'get', method: 'get',
url: '/samples?status[]=new&status[]=validated&fields[]=number&fields[]=type&filters[]=%7B%22mode%22%3A%22eq%22%2C%22field%22%3A%22type%22%2C%22values%22%3A%5B%22processed%22%5D%7D', url: '/samples?status[]=new&status[]=validated&fields[]=number&fields[]=type&filters[]=%7B%22mode%22%3A%22eq%22%2C%22field%22%3A%22type%22%2C%22values%22%3A%5B%22processed%22%5D%7D',
@ -801,7 +798,7 @@ describe('/sample', () => {
}); });
}); });
describe('PUT /sample/{id}', () => { // TODO: fix tests, work on /samples describe('PUT /sample/{id}', () => {
it('returns the right sample', done => { it('returns the right sample', done => {
TestHelper.request(server, done, { TestHelper.request(server, done, {
method: 'put', method: 'put',

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@ -22,13 +22,6 @@ import globals from '../globals';
const router = express.Router(); const router = express.Router();
// TODO: check added filter
// TODO: convert filter value to number according to table model
// TODO: validation for filter parameters
// TODO: location/device sort/filter
// TODO: think about filter keys with measurement template versions
router.get('/samples', async (req, res, next) => { router.get('/samples', async (req, res, next) => {
if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return; if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
@ -40,12 +33,6 @@ router.get('/samples', async (req, res, next) => {
if ((filters.fields.find(e => e.indexOf('.' + globals.spectrum.dpt) >= 0) || filters.output !== 'json') && if ((filters.fields.find(e => e.indexOf('.' + globals.spectrum.dpt) >= 0) || filters.output !== 'json') &&
!req.auth(res, ['dev', 'admin'], 'all')) return; !req.auth(res, ['dev', 'admin'], 'all')) return;
// TODO: find a better place for these
const sampleKeys = ['_id', 'color', 'number', 'type', 'batch', 'added', 'condition', 'material_id', 'note_id',
'user_id'];
// TODO find further optimizations from bachelor thesis
// evaluate sort parameter from 'color-asc' to ['color', 1] // evaluate sort parameter from 'color-asc' to ['color', 1]
filters.sort = filters.sort.split('-'); filters.sort = filters.sort.split('-');
filters.sort[0] = filters.sort[0] === 'added' ? '_id' : filters.sort[0]; // route added sorting criteria to _id filters.sort[0] = filters.sort[0] === 'added' ? '_id' : filters.sort[0]; // route added sorting criteria to _id
@ -123,7 +110,7 @@ router.get('/samples', async (req, res, next) => {
let sortStartValue = null; let sortStartValue = null;
if (filters['from-id']) { // from-id specified, fetch values for sorting if (filters['from-id']) { // from-id specified, fetch values for sorting
const fromSample = await MeasurementModel.findOne({sample_id: mongoose.Types.ObjectId(filters['from-id'])}) const fromSample = await MeasurementModel.findOne({sample_id: mongoose.Types.ObjectId(filters['from-id'])})
.lean().exec().catch(err => {next(err);}); // TODO: what if more than one measurement for sample? .lean().exec().catch(err => {next(err);});
if (fromSample instanceof Error) return; if (fromSample instanceof Error) return;
if (!fromSample) { if (!fromSample) {
return res.status(400).json({status: 'Invalid body format', details: 'from-id not found'}); return res.status(400).json({status: 'Invalid body format', details: 'from-id not found'});
@ -149,7 +136,8 @@ router.get('/samples', async (req, res, next) => {
collection = SampleModel; collection = SampleModel;
queryPtr[0].$match.$and.push(statusQuery(filters, 'status')); queryPtr[0].$match.$and.push(statusQuery(filters, 'status'));
if (sampleKeys.indexOf(filters.sort[0]) >= 0) { // sorting for sample keys // sorting for sample keys
if (SampleValidate.sampleKeys.indexOf(filters.sort[0]) >= 0 || /condition\./.test(filters.sort[0])) {
let sortStartValue = null; let sortStartValue = null;
if (filters['from-id']) { // from-id specified if (filters['from-id']) { // from-id specified
const fromSample = await SampleModel.findById(filters['from-id']).lean().exec().catch(err => { const fromSample = await SampleModel.findById(filters['from-id']).lean().exec().catch(err => {
@ -168,13 +156,15 @@ router.get('/samples', async (req, res, next) => {
} }
} }
addFilterQueries(queryPtr, filters.filters.filter(e => sampleKeys.indexOf(e.field) >= 0)); // sample filters addFilterQueries(queryPtr, filters.filters.filter(
e => (SampleValidate.sampleKeys.indexOf(e.field) >= 0) || /condition\./.test(e.field))
); // sample filters
let materialQuery = []; // put material query together separate first to reuse for first-id let materialQuery = []; // put material query together separate first to reuse for first-id
let materialAdded = false; let materialAdded = false;
if (sortFilterKeys.find(e => /material\./.test(e))) { // add material fields if (sortFilterKeys.find(e => /material\./.test(e))) { // add material fields
materialAdded = true; materialAdded = true;
materialQuery.push( // add material properties // TODO: project out unnecessary fields materialQuery.push( // add material properties
{$lookup: {from: 'materials', localField: 'material_id', foreignField: '_id', as: 'material'}}, {$lookup: {from: 'materials', localField: 'material_id', foreignField: '_id', as: 'material'}},
{$addFields: {material: {$arrayElemAt: ['$material', 0]}}} {$addFields: {material: {$arrayElemAt: ['$material', 0]}}}
); );
@ -198,16 +188,8 @@ router.get('/samples', async (req, res, next) => {
{$addFields: {'material.group': { $arrayElemAt: ['$material.group.name', 0]}}} {$addFields: {'material.group': { $arrayElemAt: ['$material.group.name', 0]}}}
); );
} }
// TODO: adapt code to new numbers format
// if (sortFilterKeys.find(e => e === 'material.number')) { // add material number if needed
// materialQuery.push(
// {$addFields: {'material.number': { $arrayElemAt: [
// '$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}
// ]}}}
// );
// }
const specialMFilters = sortFilterKeys.filter(e => /material\./.test(e)) const specialMFilters = sortFilterKeys.filter(e => /material\./.test(e))
.filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) >= 0); // TODO .filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) >= 0);
// base material filters // base material filters
addFilterQueries(materialQuery, filters.filters.filter(e => specialMFilters.indexOf(e.field) >= 0)); addFilterQueries(materialQuery, filters.filters.filter(e => specialMFilters.indexOf(e.field) >= 0));
queryPtr.push(...materialQuery); queryPtr.push(...materialQuery);
@ -250,8 +232,17 @@ router.get('/samples', async (req, res, next) => {
]}}}], ]}}}],
as: 'measurements' as: 'measurements'
}}); }});
measurementTemplates.forEach(template => { const groupedMeasurementTemplates = measurementTemplates.reduce((s, e) => {
addMeasurements(queryPtr, template); if (s.hasOwnProperty(e.name)) {
s[e.name].push(e);
}
else {
s[e.name] = [e];
}
return s;
}, {});
Object.values(groupedMeasurementTemplates).forEach(templates => {
addMeasurements(queryPtr, templates);
}); });
addFilterQueries(queryPtr, filters.filters addFilterQueries(queryPtr, filters.filters
.filter(e => sortFilterKeys.filter(e => /measurements\./.test(e)).indexOf(e.field) >= 0) .filter(e => sortFilterKeys.filter(e => /measurements\./.test(e)).indexOf(e.field) >= 0)
@ -310,13 +301,6 @@ router.get('/samples', async (req, res, next) => {
{$addFields: {'material.group': { $arrayElemAt: ['$material.group.name', 0]}}} {$addFields: {'material.group': { $arrayElemAt: ['$material.group.name', 0]}}}
); );
} }
// if (fieldsToAdd.indexOf('material.number') >= 0) { // add material number if needed // TODO
// queryPtr.push(
// {$addFields: {'material.number': {
// $arrayElemAt: ['$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}]
// }}}
// );
// }
let measurementFieldsFields: string[] = _.uniq( let measurementFieldsFields: string[] = _.uniq(
fieldsToAdd.filter(e => /measurements\./.test(e)).map(e => e.split('.')[1]) fieldsToAdd.filter(e => /measurements\./.test(e)).map(e => e.split('.')[1])
@ -328,8 +312,8 @@ router.get('/samples', async (req, res, next) => {
if (measurementTemplates.length < measurementFieldsFields.length) { if (measurementTemplates.length < measurementFieldsFields.length) {
return res.status(400).json({status: 'Invalid body format', details: 'Measurement key not found'}); return res.status(400).json({status: 'Invalid body format', details: 'Measurement key not found'});
} }
// use different lookup methods with and without spectrum for the best performance // use different lookup methods with and without dpt for the best performance
if (fieldsToAdd.find(e => e.indexOf(globals.spectrum.spectrum + '.') >= 0)) { if (fieldsToAdd.find(e => e.indexOf(globals.spectrum.spectrum + '.' + globals.spectrum.dpt) >= 0)) { // with dpt
queryPtr.push( queryPtr.push(
{$lookup: {from: 'measurements', localField: '_id', foreignField: 'sample_id', as: 'measurements'}} {$lookup: {from: 'measurements', localField: '_id', foreignField: 'sample_id', as: 'measurements'}}
); );
@ -344,21 +328,23 @@ router.get('/samples', async (req, res, next) => {
as: 'measurements' as: 'measurements'
}}); }});
} }
measurementTemplates.forEach(template => { const groupedMeasurementTemplates = measurementTemplates.reduce((s, e) => {
addMeasurements(queryPtr, template); if (s.hasOwnProperty(e.name)) {
if (measurementFieldsFields.find(e => e === globals.spectrum.spectrum)) { s[e.name].push(e);
queryPtr.push({$unwind: '$' + globals.spectrum.spectrum});
} }
else {
s[e.name] = [e];
}
return s;
}, {});
Object.values(groupedMeasurementTemplates).forEach(templates => {
addMeasurements(queryPtr, templates);
}); });
queryPtr.push({$project: {measurements: 0}}); queryPtr.push({$project: {measurements: 0}});
} }
const projection = filters.fields.map(e => e.replace('measurements.', '')) const projection = filters.fields.map(e => e.replace('measurements.', ''))
.reduce((s, e) => {s[e] = true; return s; }, {}); .reduce((s, e) => {s[e] = true; return s; }, {});
if (filters.fields.indexOf('added') >= 0) { // add added date // TODO: upgrade MongoDB version or find alternative
// projection.added = {$toDate: '$_id'};
// projection.added = { $convert: { input: '$_id', to: "date" } }
}
if (filters.fields.indexOf('_id') < 0 && filters.fields.indexOf('added') < 0) { // disable _id explicitly if (filters.fields.indexOf('_id') < 0 && filters.fields.indexOf('added') < 0) { // disable _id explicitly
projection._id = false; projection._id = false;
} }
@ -781,12 +767,13 @@ function customFieldsChange (fields, amount, req) { // update custom_fields and
function sortQuery(filters, sortKeys, sortStartValue) { // sortKeys = ['primary key', 'secondary key'] function sortQuery(filters, sortKeys, sortStartValue) { // sortKeys = ['primary key', 'secondary key']
if (filters['from-id']) { // from-id specified if (filters['from-id']) { // from-id specified
const ssv = sortStartValue !== undefined; // if value is not given, match for existence
if ((filters['to-page'] === 0 && filters.sort[1] === 1) || (filters.sort[1] * filters['to-page'] > 0)) { // asc if ((filters['to-page'] === 0 && filters.sort[1] === 1) || (filters.sort[1] * filters['to-page'] > 0)) { // asc
return [ return [
{$match: {$or: [ {$match: {$or: [
{[sortKeys[0]]: {$gt: sortStartValue}}, {[sortKeys[0]]: ssv ? {$gt: sortStartValue} : {$exists: true}},
{$and: [ {$and: [
{[sortKeys[0]]: sortStartValue}, {[sortKeys[0]]: ssv ? sortStartValue : {$exists: false}},
{[sortKeys[1]]: {$gte: new mongoose.Types.ObjectId(filters['from-id'])}} {[sortKeys[1]]: {$gte: new mongoose.Types.ObjectId(filters['from-id'])}}
]} ]}
]}}, ]}},
@ -795,9 +782,9 @@ function sortQuery(filters, sortKeys, sortStartValue) { // sortKeys = ['primary
} else { } else {
return [ return [
{$match: {$or: [ {$match: {$or: [
{[sortKeys[0]]: {$lt: sortStartValue}}, {[sortKeys[0]]: ssv ? {$lt: sortStartValue} : {$exists: false}},
{$and: [ {$and: [
{[sortKeys[0]]: sortStartValue}, {[sortKeys[0]]: ssv ? sortStartValue : {$exists: true}},
{[sortKeys[1]]: {$lte: new mongoose.Types.ObjectId(filters['from-id'])}} {[sortKeys[1]]: {$lte: new mongoose.Types.ObjectId(filters['from-id'])}}
]} ]}
]}}, ]}},
@ -834,20 +821,25 @@ function filterQueries (filters) {
}); });
} }
// add measurements as property [template.name], if one result, array is reduced to direct values // add measurements as property [template.name], if one result, array is reduced to direct values. All given templates
function addMeasurements(queryPtr, template) { // must have the same name
function addMeasurements(queryPtr, templates) {
queryPtr.push( queryPtr.push(
{$addFields: {[template.name]: {$let: {vars: { {$addFields: {[templates[0].name]: {$let: {vars: {
arr: {$filter: { arr: {$filter: {
input: '$measurements', cond: {$eq: ['$$this.measurement_template', mongoose.Types.ObjectId(template._id)]} input: '$measurements', cond: {$in: [
'$$this.measurement_template',
templates.map(e => mongoose.Types.ObjectId(e._id))
]}
}}}, }}},
in: {$cond: [{$lte: [{$size: '$$arr'}, 1]}, {$arrayElemAt: ['$$arr', 0]}, '$$arr']} in: {$cond: [{$lte: [{$size: '$$arr'}, 1]}, {$arrayElemAt: ['$$arr', 0]}, '$$arr']}
}}}}, }}}},
{$addFields: {[template.name]: {$cond: [ {$addFields: {[templates[0].name]: {$cond: [
'$' + template.name + '.values', '$' + templates[0].name + '.values',
'$' + template.name + '.values', '$' + templates[0].name + '.values',
template.parameters.reduce((s, e) => {s[e.name] = null; return s;}, {}) templates[0].parameters.reduce((s, e) => {s[e.name] = null; return s;}, {})
]}}} ]}}},
{$unwind: '$' + templates[0].name}
); );
} }

View File

@ -4,7 +4,6 @@ import TemplateConditionModel from '../models/condition_template';
import TemplateMeasurementModel from '../models/measurement_template'; import TemplateMeasurementModel from '../models/measurement_template';
import TestHelper from "../test/helper"; import TestHelper from "../test/helper";
// TODO: method to return only latest template versions -> rework frontend accordingly
describe('/template', () => { describe('/template', () => {
let server; let server;

View File

@ -81,7 +81,6 @@ router.put('/user:username([/](?!key|new).?*|/?)', async (req, res, next) => {
}); });
}); });
// TODO: only possible if no data is linked to user, otherwise change status, etc.
// this path matches /user, /user/ and /user/xxx, but not /user/key or user/new. // this path matches /user, /user/ and /user/xxx, but not /user/key or user/new.
// See https://forbeslindesay.github.io/express-route-tester/ for the generated regex // See https://forbeslindesay.github.io/express-route-tester/ for the generated regex
router.delete('/user:username([/](?!key|new).?*|/?)', (req, res, next) => { router.delete('/user:username([/](?!key|new).?*|/?)', (req, res, next) => {

View File

@ -6,6 +6,7 @@ import MaterialValidate from './material';
import MeasurementValidate from './measurement'; import MeasurementValidate from './measurement';
import globals from '../../globals'; import globals from '../../globals';
export default class SampleValidate { export default class SampleValidate {
private static sample = { private static sample = {
number: Joi.string() number: Joi.string()
@ -56,6 +57,19 @@ export default class SampleValidate {
.valid(...Object.values(globals.status)) .valid(...Object.values(globals.status))
}; };
static readonly sampleKeys = [ // keys which can be found in the sample directly
'_id',
'color',
'number',
'type',
'batch',
'added',
'condition',
'material_id',
'note_id',
'user_id'
];
private static sortKeys = [ private static sortKeys = [
'_id', '_id',
'color', 'color',
@ -68,6 +82,7 @@ export default class SampleValidate {
'material.supplier', 'material.supplier',
'material.group', 'material.group',
'material.properties.*', 'material.properties.*',
'condition.*',
`measurements.(?!${globals.spectrum.spectrum}.${globals.spectrum.dpt})*` `measurements.(?!${globals.spectrum.spectrum}.${globals.spectrum.dpt})*`
]; ];
@ -189,7 +204,7 @@ export default class SampleValidate {
}); });
field = field.replace('material.', '').split('.')[0]; field = field.replace('material.', '').split('.')[0];
} }
else if (/measurements\./.test(field)) { else if (/measurements\./.test(field) || /condition\./.test(field)) {
validator = Joi.object({ validator = Joi.object({
value: Joi.alternatives() value: Joi.alternatives()
.try( .try(

View File

@ -1,7 +1,6 @@
import Joi from 'joi'; import Joi from 'joi';
import IdValidate from './id'; import IdValidate from './id';
// TODO: do not allow a . in the name !!!
export default class TemplateValidate { export default class TemplateValidate {
private static template = { private static template = {
name: Joi.string() name: Joi.string()

View File

@ -678,6 +678,13 @@
"__v": 0 "__v": 0
} }
], ],
"models": [
{
"_id": {"$oid":"140000000000000000000001"},
"name": "modela",
"data": {"buffer": "binary data"}
}
],
"users": [ "users": [
{ {
"_id": {"$oid":"000000000000000000000001"}, "_id": {"$oid":"000000000000000000000001"},

View File

@ -69,6 +69,9 @@ export default class TestHelper {
if (options.hasOwnProperty('req')) { // request body if (options.hasOwnProperty('req')) { // request body
st = st.send(options.req); st = st.send(options.req);
} }
if (options.hasOwnProperty('reqContentType')) { // request body
st = st.set('Content-Type', options.reqContentType);
}
if (options.hasOwnProperty('auth') && options.auth.hasOwnProperty('basic')) { // resolve basic auth if (options.hasOwnProperty('auth') && options.auth.hasOwnProperty('basic')) { // resolve basic auth
if (this.auth.hasOwnProperty(options.auth.basic)) { if (this.auth.hasOwnProperty(options.auth.basic)) {
st = st.auth(options.auth.basic, this.auth[options.auth.basic].pass) st = st.auth(options.auth.basic, this.auth[options.auth.basic].pass)