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				@@ -28,6 +28,7 @@ const router = express.Router();
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				// TODO: think about filter keys with measurement template versions
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				router.get('/samples', async (req, res, next) => {
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				  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
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				@@ -35,7 +36,8 @@ router.get('/samples', async (req, res, next) => {
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				  if (error) return res400(error, res);
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				  // TODO: find a better place for these
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				  const sampleKeys = ['_id', 'color', 'number', 'type', 'batch', 'added', 'condition', 'material_id', 'note_id', 'user_id'];
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				  const sampleKeys = ['_id', 'color', 'number', 'type', 'batch', 'added', 'condition', 'material_id', 'note_id',
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				    'user_id'];
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				  // evaluate sort parameter from 'color-asc' to ['color', 1]
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				  filters.sort = filters.sort.split('-');
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				@@ -74,7 +76,8 @@ router.get('/samples', async (req, res, next) => {
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				    }
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				    else {
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				      // start and end of day
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				      const date = [new Date(addedFilter.values[0]).setHours(0,0,0,0), new Date(addedFilter.values[0]).setHours(23,59,59,999)];
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				      const date = [new Date(addedFilter.values[0]).setHours(0,0,0,0),
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				        new Date(addedFilter.values[0]).setHours(23,59,59,999)];
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				      if (addedFilter.mode === 'lt') {  // lt start
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				        filters.filters.push({mode: 'lt', field: '_id', values: [dateToOId(date[0])]});
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				      }
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				@@ -88,7 +91,8 @@ router.get('/samples', async (req, res, next) => {
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				        filters.filters.push({mode: 'gte', field: '_id', values: [dateToOId(date[0])]});
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				      }
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				      if (addedFilter.mode === 'ne') {
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				        filters.filters.push({mode: 'or', field: '_id', values: [{ _id: { '$lt': dateToOId(date[0])}}, { _id: { '$gt': dateToOId(date[1])}}]});
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				        filters.filters.push({mode: 'or', field: '_id',
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				          values: [{ _id: { '$lt': dateToOId(date[0])}}, { _id: { '$gt': dateToOId(date[1])}}]});
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				      }
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				    }
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				  }
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				@@ -103,27 +107,31 @@ router.get('/samples', async (req, res, next) => {
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				  if (filters.sort[0].indexOf('measurements.') >= 0) {  // sorting with measurements as starting collection
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				    collection = MeasurementModel;
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				    const [,measurementName, measurementParam] = filters.sort[0].split('.');
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				    const measurementTemplates = await MeasurementTemplateModel.find({name: measurementName}).lean().exec().catch(err => {next(err);});
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				    const measurementTemplates = await MeasurementTemplateModel.find({name: measurementName})
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				      .lean().exec().catch(err => {next(err);});
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				    if (measurementTemplates instanceof Error) return;
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				    if (!measurementTemplates) {
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				      return res.status(400).json({status: 'Invalid body format', details: filters.sort[0] + ' not found'});
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				    }
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				    let sortStartValue = null;
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				    if (filters['from-id']) {  // from-id specified, fetch values for sorting
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				      const fromSample = await MeasurementModel.findOne({sample_id: mongoose.Types.ObjectId(filters['from-id'])}).lean().exec().catch(err => {next(err);});  // TODO: what if more than one measurement for sample?
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				      const fromSample = await MeasurementModel.findOne({sample_id: mongoose.Types.ObjectId(filters['from-id'])})
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				        .lean().exec().catch(err => {next(err);});  // TODO: what if more than one measurement for sample?
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				      if (fromSample instanceof Error) return;
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				      if (!fromSample) {
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				        return res.status(400).json({status: 'Invalid body format', details: 'from-id not found'});
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				      }
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				      sortStartValue = fromSample.values[measurementParam];
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				    }
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				    queryPtr[0].$match.$and.push({measurement_template: {$in: measurementTemplates.map(e => e._id)}});  // find measurements to sort
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				    // find measurements to sort
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				    queryPtr[0].$match.$and.push({measurement_template: {$in: measurementTemplates.map(e => e._id)}});
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				    if (filters.filters.find(e => e.field === filters.sort[0])) {  // sorted measurement should also be filtered
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				      queryPtr[0].$match.$and.push(...filterQueries(filters.filters.filter(e => e.field === filters.sort[0]).map(e => {e.field = 'values.' + e.field.split('.')[2]; return e; })));
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				      queryPtr[0].$match.$and.push(...filterQueries(filters.filters.filter(e => e.field === filters.sort[0])
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				        .map(e => {e.field = 'values.' + e.field.split('.')[2]; return e; })));
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				    }
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				    queryPtr.push(
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				      ...sortQuery(filters, ['values.' + measurementParam, 'sample_id'], sortStartValue),  // sort measurements
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				      {$replaceRoot: {newRoot: {measurement: '$$ROOT'}}},                                  // fetch samples and restructure them to fit sample structure
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				      {$replaceRoot: {newRoot: {measurement: '$$ROOT'}}},  // fetch samples and restructure them to fit sample structure
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				      {$lookup: {from: 'samples', localField: 'measurement.sample_id', foreignField: '_id', as: 'sample'}},
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				      {$match: statusQuery(filters, 'sample.status')},  // filter out wrong status once samples were added
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				      {$addFields: {['sample.' + measurementName]: '$measurement.values'}},  // more restructuring
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				@@ -159,43 +167,52 @@ router.get('/samples', async (req, res, next) => {
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				  let materialAdded = false;
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				  if (sortFilterKeys.find(e => /material\./.test(e))) {  //  add material fields
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				    materialAdded = true;
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				    materialQuery.push(  // add material properties
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				      {$lookup: {from: 'materials', localField: 'material_id', foreignField: '_id', as: 'material'}},  // TODO: project out unnecessary fields
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				    materialQuery.push(  // add material properties  // TODO: project out unnecessary fields
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				      {$lookup: {from: 'materials', localField: 'material_id', foreignField: '_id', as: 'material'}},
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				      {$addFields: {material: {$arrayElemAt: ['$material', 0]}}}
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				    );
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				    const baseMFilters = sortFilterKeys.filter(e => /material\./.test(e)).filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) < 0);
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				    addFilterQueries(materialQuery, filters.filters.filter(e => baseMFilters.indexOf(e.field) >= 0));  // base material filters
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				    const baseMFilters = sortFilterKeys.filter(e => /material\./.test(e))
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				      .filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) < 0);
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				    // base material filters
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				    addFilterQueries(materialQuery, filters.filters.filter(e => baseMFilters.indexOf(e.field) >= 0));
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				    if (sortFilterKeys.find(e => e === 'material.supplier')) {  // add supplier if needed
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				      materialQuery.push(
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				        {$lookup: { from: 'material_suppliers', localField: 'material.supplier_id', foreignField: '_id', as: 'material.supplier'}},
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				        {$lookup: {
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				          from: 'material_suppliers', localField: 'material.supplier_id', foreignField: '_id', as: 'material.supplier'}
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				        },
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				        {$addFields: {'material.supplier': {$arrayElemAt: ['$material.supplier.name', 0]}}}
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				      );
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				    }
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				    if (sortFilterKeys.find(e => e === 'material.group')) {  // add group if needed
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				      materialQuery.push(
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				        {$lookup: { from: 'material_groups', localField: 'material.group_id', foreignField: '_id', as: 'material.group' }},
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				        {$lookup: {
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				          from: 'material_groups', localField: 'material.group_id', foreignField: '_id', as: 'material.group' }
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				        },
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				        {$addFields: {'material.group': { $arrayElemAt: ['$material.group.name', 0]}}}
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				      );
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				    }
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				    if (sortFilterKeys.find(e => e === 'material.number')) {  // add material number if needed
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				      materialQuery.push(
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				        {$addFields: {'material.number': { $arrayElemAt: ['$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}]}}}
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				        {$addFields: {'material.number': { $arrayElemAt: [
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				          '$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}
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				        ]}}}
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				      );
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				    }
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				    const specialMFilters = sortFilterKeys.filter(e => /material\./.test(e)).filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) >= 0);
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				    addFilterQueries(materialQuery, filters.filters.filter(e => specialMFilters.indexOf(e.field) >= 0));  // base material filters
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				    const specialMFilters = sortFilterKeys.filter(e => /material\./.test(e))
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				      .filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) >= 0);
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				    // base material filters
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				    addFilterQueries(materialQuery, filters.filters.filter(e => specialMFilters.indexOf(e.field) >= 0));
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				    queryPtr.push(...materialQuery);
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				    if (/material\./.test(filters.sort[0])) {  // sort by material key
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				      let sortStartValue = null;
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				      if (filters['from-id']) {  // from-id specified
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				        const fromSample = await SampleModel.aggregate([{$match: {_id: mongoose.Types.ObjectId(filters['from-id'])}}, ...materialQuery]).exec().catch(err => {next(err);});
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				        const fromSample = await SampleModel.aggregate(
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				          [{$match: {_id: mongoose.Types.ObjectId(filters['from-id'])}}, ...materialQuery]
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				        ).exec().catch(err => {next(err);});
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				        if (fromSample instanceof Error) return;
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				        if (!fromSample) {
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				          return res.status(400).json({status: 'Invalid body format', details: 'from-id not found'});
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				        }
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				        console.log(fromSample);
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				        console.log(filters.sort[0]);
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				        console.log(fromSample[filters.sort[0]]);
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				        const filterKey = filters.sort[0].split('.');
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				        if (filterKey.length === 2) {
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				          sortStartValue = fromSample[0][filterKey[0]][filterKey[1]];
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				@@ -208,23 +225,25 @@ router.get('/samples', async (req, res, next) => {
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				    }
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				  }
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				  const measurementFilterFields = _.uniq(sortFilterKeys.filter(e => /measurements\./.test(e)).map(e => e.split('.')[1]));  // filter measurement names and remove duplicates from parameters
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				  const measurementFilterFields = _.uniq(sortFilterKeys.filter(e => /measurements\./.test(e))
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				    .map(e => e.split('.')[1]));  // filter measurement names and remove duplicates from parameters
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				  if (sortFilterKeys.find(e => /measurements\./.test(e))) {  //  add measurement fields
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				    const measurementTemplates = await MeasurementTemplateModel.find({name: {$in: measurementFilterFields}}).lean().exec().catch(err => {next(err);});
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				    const measurementTemplates = await MeasurementTemplateModel.find({name: {$in: measurementFilterFields}})
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				      .lean().exec().catch(err => {next(err);});
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				    if (measurementTemplates instanceof Error) return;
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				    if (measurementTemplates.length < measurementFilterFields.length) {
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				      return res.status(400).json({status: 'Invalid body format', details: 'Measurement key not found'});
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				    }
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				    queryPtr.push({$lookup: {
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				        from: 'measurements', let: {sId: '$_id'},
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				        pipeline: [{$match: {$expr: {$and: [{$eq: ['$sample_id', '$$sId']}, {$in: ['$measurement_template', measurementTemplates.map(e => mongoose.Types.ObjectId(e._id))]}]}}}],
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        pipeline: [{$match: {$expr: {$and: [
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          {$eq: ['$sample_id', '$$sId']},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          {$in: ['$measurement_template', measurementTemplates.map(e => mongoose.Types.ObjectId(e._id))]}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        ]}}}],
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        as: 'measurements'
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    }});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    measurementTemplates.forEach(template => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      queryPtr.push({$addFields: {[template.name]: {$let: {  // add measurements as property [template.name], if one result, array is reduced to direct values
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        vars: {arr: {$filter: {input: '$measurements', cond: {$eq: ['$$this.measurement_template', mongoose.Types.ObjectId(template._id)]}}}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        in:{$cond: [{$lte: [{$size: '$$arr'}, 1]}, {$arrayElemAt: ['$$arr', 0]}, '$$arr']}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      }}}}, {$addFields: {[template.name]: {$cond: ['$' + template.name + '.values', '$' + template.name + '.values', template.parameters.reduce((s, e) => {s[e.name] = null; return s;}, {})]}}});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      addMeasurements(queryPtr, template);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    });
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    addFilterQueries(queryPtr, filters.filters
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      .filter(e => sortFilterKeys.filter(e => /measurements\./.test(e)).indexOf(e.field) >= 0)
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -232,14 +251,18 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    );  // measurement filters
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (!filters.fields.find(e => /spectrum\./.test(e)) && !filters['from-id']) {  // count total number of items before $skip and $limit, only works when from-id is not specified and spectra are not included
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  // count total number of items before $skip and $limit, only works when from-id is not specified and spectra are not
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  // included
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (!filters.fields.find(e => /spectrum\./.test(e)) && !filters['from-id']) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    queryPtr.push({$facet: {count: [{$count: 'count'}], samples: []}});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    queryPtr = queryPtr[queryPtr.length - 1].$facet.samples;  // add rest of aggregation pipeline into $facet
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  // paging
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (filters['to-page']) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    queryPtr.push({$skip: Math.abs(filters['to-page'] + Number(filters['to-page'] < 0)) * filters['page-size'] + Number(filters['to-page'] < 0)})  // number to skip, if going back pages, one page has to be skipped less but on sample more
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // number to skip, if going back pages, one page has to be skipped less but on sample more
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    queryPtr.push({$skip: Math.abs(filters['to-page'] + Number(filters['to-page'] < 0)) * filters['page-size'] +
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      Number(filters['to-page'] < 0)})
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (filters['page-size']) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    queryPtr.push({$limit: filters['page-size']});
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -265,51 +288,65 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (fieldsToAdd.indexOf('material.supplier') >= 0) {  // add supplier if needed
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    queryPtr.push(
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$lookup: { from: 'material_suppliers', localField: 'material.supplier_id', foreignField: '_id', as: 'material.supplier'}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$lookup: {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        from: 'material_suppliers', localField: 'material.supplier_id', foreignField: '_id', as: 'material.supplier'
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      }},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$addFields: {'material.supplier': {$arrayElemAt: ['$material.supplier.name', 0]}}}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    );
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (fieldsToAdd.indexOf('material.group') >= 0) {  // add group if needed
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    queryPtr.push(
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$lookup: { from: 'material_groups', localField: 'material.group_id', foreignField: '_id', as: 'material.group' }},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$lookup: {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        from: 'material_groups', localField: 'material.group_id', foreignField: '_id', as: 'material.group'
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      }},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$addFields: {'material.group': { $arrayElemAt: ['$material.group.name', 0]}}}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    );
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (fieldsToAdd.indexOf('material.number') >= 0) {  // add material number if needed
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    queryPtr.push(
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$addFields: {'material.number': { $arrayElemAt: ['$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}]}}}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$addFields: {'material.number': {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        $arrayElemAt: ['$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}]
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      }}}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    );
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  let measurementFieldsFields: string[] = _.uniq(fieldsToAdd.filter(e => /measurements\./.test(e)).map(e => e.split('.')[1]));  // filter measurement names and remove duplicates from parameters
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  let measurementFieldsFields: string[] = _.uniq(
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    fieldsToAdd.filter(e => /measurements\./.test(e)).map(e => e.split('.')[1])
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  );  // filter measurement names and remove duplicates from parameters
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (fieldsToAdd.find(e => /measurements\./.test(e))) {  // add measurement fields
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    const measurementTemplates = await MeasurementTemplateModel.find({name: {$in: measurementFieldsFields}}).lean().exec().catch(err => {next(err);});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    const measurementTemplates = await MeasurementTemplateModel.find({name: {$in: measurementFieldsFields}})
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      .lean().exec().catch(err => {next(err);});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (measurementTemplates instanceof Error) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (measurementTemplates.length < measurementFieldsFields.length) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      return res.status(400).json({status: 'Invalid body format', details: 'Measurement key not found'});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (fieldsToAdd.find(e => /spectrum\./.test(e))) {  // use different lookup methods with and without spectrum for the best performance
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      queryPtr.push({$lookup: {from: 'measurements', localField: '_id', foreignField: 'sample_id', as: 'measurements'}});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // use different lookup methods with and without spectrum for the best performance
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (fieldsToAdd.find(e => /spectrum\./.test(e))) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      queryPtr.push(
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        {$lookup: {from: 'measurements', localField: '_id', foreignField: 'sample_id', as: 'measurements'}}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      );
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    else {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      queryPtr.push({$lookup: {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          from: 'measurements', let: {sId: '$_id'},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          pipeline: [{$match: {$expr: {$and: [{$eq: ['$sample_id', '$$sId']}, {$in: ['$measurement_template', measurementTemplates.map(e => mongoose.Types.ObjectId(e._id))]}]}}}],
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          pipeline: [{$match: {$expr: {$and: [
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				            {$eq: ['$sample_id', '$$sId']},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				            {$in: ['$measurement_template', measurementTemplates.map(e => mongoose.Types.ObjectId(e._id))]}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          ]}}}],
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          as: 'measurements'
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        }});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    measurementTemplates.forEach(template => {  // TODO: hard coded dpt for special treatment, change later
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      queryPtr.push({$addFields: {[template.name]: {$let: {  // add measurements as property [template.name], if one result, array is reduced to direct values
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				              vars: {arr: {$filter: {input: '$measurements', cond: {$eq: ['$$this.measurement_template', mongoose.Types.ObjectId(template._id)]}}}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				              in:{$cond: [{$lte: [{$size: '$$arr'}, 1]}, {$arrayElemAt: ['$$arr', 0]}, '$$arr']}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				            }}}}, {$addFields: {[template.name]: {$cond: ['$' + template.name + '.values', '$' + template.name + '.values', template.parameters.reduce((s, e) => {s[e.name] = null; return s;}, {})]}}});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      addMeasurements(queryPtr, template);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (measurementFieldsFields.find(e => e === 'spectrum')) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        queryPtr.push({$unwind: '$spectrum'});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    });
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // if (measurementFieldsFields.find(e => e === 'spectrum')) {  // TODO: remove hardcoded as well
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    //   queryPtr.push(
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    //     {$addFields: {spectrum: {$filter: {input: '$measurements', cond: {$eq: ['$$this.measurement_template', measurementTemplates.filter(e => e.name === 'spectrum')[0]._id]}}}}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    //     {$addFields: {spectrum: {$filter: {input: '$measurements', cond: {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    //       $eq: ['$$this.measurement_template', measurementTemplates.filter(e => e.name === 'spectrum')[0]._id]
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    //     }}}}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    //     {$addFields: {spectrum: '$spectrum.values'}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    //     {$unwind: '$spectrum'}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    //   );
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -318,10 +355,11 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    queryPtr.push({$project: {measurements: 0}});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const projection = filters.fields.map(e => e.replace('measurements.', '')).reduce((s, e) => {s[e] = true; return s; }, {});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (filters.fields.indexOf('added') >= 0) {  // add added date
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const projection = filters.fields.map(e => e.replace('measurements.', ''))
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    .reduce((s, e) => {s[e] = true; return s; }, {});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (filters.fields.indexOf('added') >= 0) {  // add added date  // TODO: upgrade MongoDB version or find alternative
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // projection.added = {$toDate: '$_id'};
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // projection.added = { $convert: { input: '$_id', to: "date" } }  // TODO: upgrade MongoDB version or find alternative
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // projection.added = { $convert: { input: '$_id', to: "date" } }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (filters.fields.indexOf('_id') < 0 && filters.fields.indexOf('added') < 0) {  // disable _id explicitly
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    projection._id = false;
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -347,7 +385,10 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (filters['to-page'] < 0) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        data.reverse();
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      const measurementFields = _.uniq([filters.sort[0].split('.')[1], ...measurementFilterFields, ...measurementFieldsFields]);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      const measurementFields = _.uniq(
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        [filters.sort[0].split('.')[1],
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        ...measurementFilterFields, ...measurementFieldsFields]
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      );
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (filters.csv) {  // output as csv
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        csv(_.compact(data.map(e => SampleValidate.output(e, 'refs', measurementFields))), (err, data) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          if (err) return next(err);
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -355,8 +396,8 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          res.send(data);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        });
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      else {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        res.json(_.compact(data.map(e => SampleValidate.output(e, 'refs', measurementFields))));  // validate all and filter null values from validation errors
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      else {  // validate all and filter null values from validation errors
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        res.json(_.compact(data.map(e => SampleValidate.output(e, 'refs', measurementFields))));
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    });
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -389,7 +430,8 @@ router.get('/samples/:state(new|deleted)', (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  SampleModel.find({status: globals.status[req.params.state]}).lean().exec((err, data) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (err) return next(err);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    res.json(_.compact(data.map(e => SampleValidate.output(e))));  // validate all and filter null values from validation errors
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // validate all and filter null values from validation errors
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    res.json(_.compact(data.map(e => SampleValidate.output(e))));
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  });
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -405,7 +447,8 @@ router.get('/samples/count', (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				router.get('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  SampleModel.findById(req.params.id).populate('material_id').populate('user_id', 'name').populate('note_id').exec(async (err, sampleData: any) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  SampleModel.findById(req.params.id).populate('material_id').populate('user_id', 'name').populate('note_id')
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    .exec(async (err, sampleData: any) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (err) return next(err);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    await sampleReturn(sampleData, req, res, next);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  });
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -434,8 +477,11 @@ router.put('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    else if (sample.hasOwnProperty('color')) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (!await materialCheck(sample, res, next, sampleData.material_id)) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (sample.hasOwnProperty('condition') && !(_.isEmpty(sample.condition) && _.isEmpty(sampleData.condition))) {  // do not execute check if condition is and was empty
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (!await conditionCheck(sample.condition, 'change', res, next, sampleData.condition.condition_template.toString() !== sample.condition.condition_template)) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // do not execute check if condition is and was empty
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (sample.hasOwnProperty('condition') && !(_.isEmpty(sample.condition) && _.isEmpty(sampleData.condition))) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (!await conditionCheck(sample.condition, 'change', res, next,
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        !(sampleData.condition.condition_template &&
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        sampleData.condition.condition_template.toString() === sample.condition.condition_template))) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (sample.hasOwnProperty('notes')) {
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -443,7 +489,8 @@ router.put('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (sampleData.note_id !== null) {  // old notes data exists
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        const data = await NoteModel.findById(sampleData.note_id).lean().exec().catch(err => {next(err);}) as any;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        if (data instanceof Error) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        newNotes = !_.isEqual(_.pick(IdValidate.stringify(data), _.keys(sample.notes)), sample.notes);  // check if notes were changed
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        // check if notes were changed
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        newNotes = !_.isEqual(_.pick(IdValidate.stringify(data), _.keys(sample.notes)), sample.notes);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        if (newNotes) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          if (data.hasOwnProperty('custom_fields')) {  // update note_fields
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				            customFieldsChange(Object.keys(data.custom_fields), -1, req);
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -456,7 +503,8 @@ router.put('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (_.keys(sample.notes).length > 0 && newNotes) {  // save new notes
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        if (!await sampleRefCheck(sample, res, next)) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        if (sample.notes.hasOwnProperty('custom_fields') && Object.keys(sample.notes.custom_fields).length > 0) {  // new custom_fields
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        // new custom_fields
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        if (sample.notes.hasOwnProperty('custom_fields') && Object.keys(sample.notes.custom_fields).length > 0) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          customFieldsChange(Object.keys(sample.notes.custom_fields), 1, req);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        let data = await new NoteModel(sample.notes).save().catch(err => { return next(err)});  // save new notes
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -491,11 +539,13 @@ router.delete('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // only maintain and admin are allowed to edit other user's data
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (sampleData.user_id.toString() !== req.authDetails.id && !req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    await SampleModel.findByIdAndUpdate(req.params.id, {status:globals.status.deleted}).log(req).lean().exec(err => {  // set sample status
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // set sample status
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    await SampleModel.findByIdAndUpdate(req.params.id, {status:globals.status.deleted}).log(req).lean().exec(err => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (err) return next(err);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      // set status of associated measurements also to deleted
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      MeasurementModel.updateMany({sample_id: mongoose.Types.ObjectId(req.params.id)}, {status: -1}).log(req).lean().exec(err => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      MeasurementModel.updateMany({sample_id: mongoose.Types.ObjectId(req.params.id)}, {status: -1})
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        .log(req).lean().exec(err => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        if (err) return next(err);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        if (sampleData.note_id !== null) {  // handle notes
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -518,7 +568,8 @@ router.delete('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				router.get('/sample/number/:number', (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  SampleModel.findOne({number: req.params.number}).populate('material_id').populate('user_id', 'name').populate('note_id').exec(async (err, sampleData: any) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  SampleModel.findOne({number: req.params.number}).populate('material_id').populate('user_id', 'name')
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    .populate('note_id').exec(async (err, sampleData: any) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (err) return next(err);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    await sampleReturn(sampleData, req, res, next);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  });
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -572,13 +623,15 @@ router.post('/sample/new', async (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    req.body.condition = {};
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const {error, value: sample} = SampleValidate.input(req.body, 'new' + (req.authDetails.level === 'admin' ? '-admin' : ''));
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const {error, value: sample} =
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    SampleValidate.input(req.body, 'new' + (req.authDetails.level === 'admin' ? '-admin' : ''));
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (error) return res400(error, res);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (!await materialCheck(sample, res, next)) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (!await sampleRefCheck(sample, res, next)) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (sample.notes.hasOwnProperty('custom_fields') && Object.keys(sample.notes.custom_fields).length > 0) {  // new custom_fields
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  // new custom_fields
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (sample.notes.hasOwnProperty('custom_fields') && Object.keys(sample.notes.custom_fields).length > 0) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    customFieldsChange(Object.keys(sample.notes.custom_fields), 1, req);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -615,21 +668,27 @@ router.get('/sample/notes/fields', (req, res, next) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  NoteFieldModel.find({}).lean().exec((err, data) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (err) return next(err);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    res.json(_.compact(data.map(e => NoteFieldValidate.output(e))));  // validate all and filter null values from validation errors
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // validate all and filter null values from validation errors
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    res.json(_.compact(data.map(e => NoteFieldValidate.output(e))));
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  })
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				module.exports = router;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				// store the highest generated number for each location to avoid duplicate numbers
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				const numberBuffer: {[location: string]: number} = {};
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				async function numberGenerate (sample, req, res, next) {  // generate number in format Location32, returns false on error
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				// generate number in format Location32, returns false on error
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				async function numberGenerate (sample, req, res, next) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const sampleData = await SampleModel
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    .aggregate([
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$match: {number: new RegExp('^' + req.authDetails.location + '[0-9]+$', 'm')}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      // {$addFields: {number2: {$toDecimal: {$arrayElemAt: [{$split: [{$arrayElemAt: [{$split: ['$number', 'Rng']}, 1]}, '_']}, 0]}}}},  // not working with MongoDb 3.6
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      // {$addFields: {number2: {$toDecimal: {$arrayElemAt: [{$split: [{$arrayElemAt:
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      //   [{$split: ['$number', 'Rng']}, 1]}, '_']}, 0]}}}},  // not working with MongoDb 3.6
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$addFields: {sortNumber: {$let: {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        vars: {tmp: {$concat: ['000000000000000000000000000000', {$arrayElemAt: [{$split: [{$arrayElemAt: [{$split: ['$number', 'Rng']}, 1]}, '_']}, 0]}]}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        vars: {tmp: {$concat: ['000000000000000000000000000000',
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				              {$arrayElemAt: [{$split: [{$arrayElemAt: [{$split: ['$number', 'Rng']}, 1]}, '_']}, 0]}]}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        in: {$substrCP: ['$$tmp', {$subtract: [{$strLenCP: '$$tmp'}, 30]}, {$strLenCP: '$$tmp'}]}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      }}}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      {$sort: {sortNumber: -1}},
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -638,11 +697,18 @@ async function numberGenerate (sample, req, res, next) {  // generate number in
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    .exec()
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    .catch(err => next(err));
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (sampleData instanceof Error) return false;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  return req.authDetails.location + (sampleData[0] ? Number(sampleData[0].number.replace(/[^0-9]+/g, '')) + 1 : 1);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  let number = (sampleData[0] ? Number(sampleData[0].number.replace(/[^0-9]+/g, '')) : 0);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (numberBuffer[req.authDetails.location] && numberBuffer[req.authDetails.location] >= number) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    number = numberBuffer[req.authDetails.location];
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  number ++;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  numberBuffer[req.authDetails.location] = number;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  return req.authDetails.location + number;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				async function numberCheck(sample, res, next) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const sampleData = await SampleModel.findOne({number: sample.number}).lean().exec().catch(err => {next(err); return false;});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const sampleData = await SampleModel.findOne({number: sample.number})
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    .lean().exec().catch(err => {next(err); return false;});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (sampleData) {  // found entry with sample number
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    res.status(400).json({status: 'Sample number already taken'});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    return false
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -650,7 +716,8 @@ async function numberCheck(sample, res, next) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  return true;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				async function materialCheck (sample, res, next, id = sample.material_id) {  // validate material_id and color, returns false if invalid
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				// validate material_id and color, returns false if invalid
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				async function materialCheck (sample, res, next, id = sample.material_id) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const materialData = await MaterialModel.findById(id).lean().exec().catch(err => next(err)) as any;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (materialData instanceof Error) return false;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (!materialData) {  // could not find material_id
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -660,12 +727,14 @@ async function materialCheck (sample, res, next, id = sample.material_id) {  //
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  return true;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				async function conditionCheck (condition, param, res, next, checkVersion = true) {  // validate treatment template, returns false if invalid, otherwise template data
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				// validate treatment template, returns false if invalid, otherwise template data
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				async function conditionCheck (condition, param, res, next, checkVersion = true) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (!condition.condition_template || !IdValidate.valid(condition.condition_template)) {  // template id not found
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    res.status(400).json({status: 'Condition template not available'});
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    return false;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const conditionData = await ConditionTemplateModel.findById(condition.condition_template).lean().exec().catch(err => next(err)) as any;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const conditionData = await ConditionTemplateModel.findById(condition.condition_template)
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    .lean().exec().catch(err => next(err)) as any;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (conditionData instanceof Error) return false;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (!conditionData) {  // template not found
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    res.status(400).json({status: 'Condition template not available'});
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -674,7 +743,8 @@ async function conditionCheck (condition, param, res, next, checkVersion = true)
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (checkVersion) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // get all template versions and check if given is latest
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    const conditionVersions = await ConditionTemplateModel.find({first_id: conditionData.first_id}).sort({version: -1}).lean().exec().catch(err => next(err)) as any;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    const conditionVersions = await ConditionTemplateModel.find({first_id: conditionData.first_id})
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      .sort({version: -1}).lean().exec().catch(err => next(err)) as any;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (conditionVersions instanceof Error) return false;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (condition.condition_template !== conditionVersions[0]._id.toString()) {  // template not latest
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      res.status(400).json({status: 'Old template version not allowed'});
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -683,14 +753,16 @@ async function conditionCheck (condition, param, res, next, checkVersion = true)
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  // validate parameters
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const {error, value: ignore} = ParametersValidate.input(_.omit(condition, 'condition_template'), conditionData.parameters, param);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  const {error, value: ignore} =
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    ParametersValidate.input(_.omit(condition, 'condition_template'), conditionData.parameters, param);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (error) {res400(error, res); return false;}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  return conditionData;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				function sampleRefCheck (sample, res, next) {  // validate sample_references, resolves false for invalid reference
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  return new Promise(resolve => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (sample.notes.hasOwnProperty('sample_references') && sample.notes.sample_references.length > 0) {  // there are sample_references
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // there are sample_references
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (sample.notes.hasOwnProperty('sample_references') && sample.notes.sample_references.length > 0) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      let referencesCount = sample.notes.sample_references.length;  // count to keep track of running async operations
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      sample.notes.sample_references.forEach(reference => {
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -715,7 +787,8 @@ function sampleRefCheck (sample, res, next) {  // validate sample_references, re
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				function customFieldsChange (fields, amount, req) {  // update custom_fields and respective quantities
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  fields.forEach(field => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    NoteFieldModel.findOneAndUpdate({name: field}, {$inc: {qty: amount}} as any, {new: true}).log(req).lean().exec((err, data: any) => {  // check if field exists
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    NoteFieldModel.findOneAndUpdate({name: field}, {$inc: {qty: amount}} as any, {new: true})
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      .log(req).lean().exec((err, data: any) => {  // check if field exists
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (err) return console.error(err);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      if (!data) {  // new field
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        new NoteFieldModel({name: field, qty: 1}).save((err, data) => {
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -735,11 +808,27 @@ function customFieldsChange (fields, amount, req) {  // update custom_fields and
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				function sortQuery(filters, sortKeys, sortStartValue) {  // sortKeys = ['primary key', 'secondary key']
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (filters['from-id']) {  // from-id specified
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if ((filters['to-page'] === 0 && filters.sort[1] === 1) || (filters.sort[1] * filters['to-page'] > 0)) {  // asc
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      return [{$match: {$or: [{[sortKeys[0]]: {$gt: sortStartValue}}, {$and: [{[sortKeys[0]]: sortStartValue}, {[sortKeys[1]]: {$gte: new mongoose.Types.ObjectId(filters['from-id'])}}]}]}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        {$sort: {[sortKeys[0]]: 1, _id: 1}}];
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      return [
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        {$match: {$or: [
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          {[sortKeys[0]]: {$gt: sortStartValue}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          {$and: [
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				            {[sortKeys[0]]: sortStartValue},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				            {[sortKeys[1]]: {$gte: new mongoose.Types.ObjectId(filters['from-id'])}}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          ]}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        ]}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        {$sort: {[sortKeys[0]]: 1, _id: 1}}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      ];
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    } else {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      return [{$match: {$or: [{[sortKeys[0]]: {$lt: sortStartValue}}, {$and: [{[sortKeys[0]]: sortStartValue}, {[sortKeys[1]]: {$lte: new mongoose.Types.ObjectId(filters['from-id'])}}]}]}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        {$sort: {[sortKeys[0]]: -1, _id: -1}}];
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      return [
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        {$match: {$or: [
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          {[sortKeys[0]]: {$lt: sortStartValue}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          {$and: [
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				            {[sortKeys[0]]: sortStartValue},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				            {[sortKeys[1]]: {$lte: new mongoose.Types.ObjectId(filters['from-id'])}}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				          ]}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        ]}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        {$sort: {[sortKeys[0]]: -1, _id: -1}}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      ];
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  } else {  // sort from beginning
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    return [{$sort: {[sortKeys[0]]: filters.sort[1], [sortKeys[1]]: filters.sort[1]}}];  // set _id as secondary sort
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				@@ -775,29 +864,49 @@ function filterQueries (filters) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      return {[e.field]: {['$in']: [new RegExp(e.values[0])]}};
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    else {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      return {[e.field]: {['$' + e.mode]: (e.mode.indexOf('in') >= 0 ? e.values : e.values[0])}};  // add filter criteria as {field: {$mode: value}}, only use first value when mode is not in/nin
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      // add filter criteria as {field: {$mode: value}}, only use first value when mode is not in/nin
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      return {[e.field]: {['$' + e.mode]: (e.mode.indexOf('in') >= 0 ? e.values : e.values[0])}};
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    }
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  });
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				// add measurements as property [template.name], if one result, array is reduced to direct values
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				function addMeasurements(queryPtr, template) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  queryPtr.push(
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    {$addFields: {[template.name]: {$let: {vars: {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      arr: {$filter: {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				        input: '$measurements', cond: {$eq: ['$$this.measurement_template', mongoose.Types.ObjectId(template._id)]}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      }}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      in: {$cond: [{$lte: [{$size: '$$arr'}, 1]}, {$arrayElemAt: ['$$arr', 0]}, '$$arr']}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    }}}},
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    {$addFields: {[template.name]: {$cond: [
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      '$' + template.name + '.values',
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      '$' + template.name + '.values',
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      template.parameters.reduce((s, e) => {s[e.name] = null; return s;}, {})
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    ]}}}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  );
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				function dateToOId (date) {  // convert date to ObjectId
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  return mongoose.Types.ObjectId(Math.floor(date / 1000).toString(16) + '0000000000000000');
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				}
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				async function sampleReturn (sampleData, req, res, next) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				  if (sampleData) {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    console.log(sampleData);
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    await sampleData.populate('material_id.group_id').populate('material_id.supplier_id').execPopulate().catch(err => next(err));
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    await sampleData.populate('material_id.group_id').populate('material_id.supplier_id')
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      .execPopulate().catch(err => next(err));
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (sampleData instanceof Error) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    sampleData = sampleData.toObject();
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (sampleData.status === globals.status.deleted && !req.auth(res, ['maintain', 'admin'], 'all')) return;  // deleted samples only available for maintain/admin
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    // deleted samples only available for maintain/admin
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    if (sampleData.status === globals.status.deleted && !req.auth(res, ['maintain', 'admin'], 'all')) return;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    sampleData.material = sampleData.material_id;  // map data to right keys
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    sampleData.material.group = sampleData.material.group_id.name;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    sampleData.material.supplier = sampleData.material.supplier_id.name;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    sampleData.user = sampleData.user_id.name;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    sampleData.notes = sampleData.note_id ? sampleData.note_id : {};
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    MeasurementModel.find({sample_id: sampleData._id, status: {$ne: globals.status.deleted}}).lean().exec((err, data) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    MeasurementModel.find({sample_id: sampleData._id, status: {$ne: globals.status.deleted}})
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      .lean().exec((err, data) => {
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      sampleData.measurements = data;
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				      res.json(SampleValidate.output(sampleData, 'details'));
 | 
			
		
		
	
		
			
				 | 
				 | 
			
			 | 
			 | 
			
				    });
 | 
			
		
		
	
	
		
			
				
					
					| 
						
					 | 
				
			
			 | 
			 | 
			
				 
 |