Archived
2

improved globals and added status and spectrum

This commit is contained in:
VLE2FE 2020-08-11 16:06:51 +02:00
parent 2c57d2045c
commit f94653f389
19 changed files with 101 additions and 88 deletions

View File

@ -146,7 +146,7 @@ export default class db {
}); });
new ChangelogModel({ new ChangelogModel({
action: req.method + ' ' + req.url, action: req.method + ' ' + req.url,
collectionName: thisOrCollection._collection.collectionName, collection_name: thisOrCollection._collection.collectionName,
conditions: thisOrCollection._conditions, conditions: thisOrCollection._conditions,
data: data, data: data,
user_id: req.authDetails.id ? req.authDetails.id : null user_id: req.authDetails.id ? req.authDetails.id : null
@ -157,7 +157,7 @@ export default class db {
else { // (req, collection, conditions, data) else { // (req, collection, conditions, data)
new ChangelogModel({ new ChangelogModel({
action: req.method + ' ' + req.url, action: req.method + ' ' + req.url,
collectionName: thisOrCollection, collection_name: thisOrCollection,
conditions: conditions, conditions: conditions,
data: data, data: data,
user_id: req.authDetails.id ? req.authDetails.id : null user_id: req.authDetails.id ? req.authDetails.id : null

View File

@ -1,16 +1,24 @@
const globals = { // globals for required names in the database. change values here to rename these properties
levels: [ // access levels, sorted asc by rights // the keys are the terms used internally, the values can be changed to other terms used in database and output
'read',
'write',
'dev',
'admin'
],
status: [ // document statuses const globals = {
'deleted', levels: { // access levels, sorted asc by rights
'new', read: 'read',
'validated', write: 'write',
] dev: 'dev',
admin: 'admin'
},
status: { // names of the document statuses
del: 'deleted',
new: 'new',
val: 'validated',
},
spectrum: { // names of required spectrum fields
spectrum: 'spectrum',
dpt: 'dpt'
}
}; };
export default globals; export default globals;

View File

@ -1,6 +1,7 @@
import basicAuth from 'basic-auth'; import basicAuth from 'basic-auth';
import bcrypt from 'bcryptjs'; import bcrypt from 'bcryptjs';
import UserModel from '../models/user'; import UserModel from '../models/user';
import globals from '../globals';
// appends req.auth(res, ['levels'], method = 'all') // appends req.auth(res, ['levels'], method = 'all')
@ -64,7 +65,12 @@ function basic (req, next): any { // checks basic auth and returns changed user
bcrypt.compare(auth.pass, data[0].pass, (err, res) => { // check password bcrypt.compare(auth.pass, data[0].pass, (err, res) => { // check password
if (err) return next(err); if (err) return next(err);
if (res === true) { // password correct if (res === true) { // password correct
resolve({level: data[0].level, name: data[0].name, id: data[0]._id.toString(), location: data[0].location}); resolve({
level: Object.entries(globals.levels).find(e => e[1] === data[0].level)[0],
name: data[0].name,
id: data[0]._id.toString(),
location: data[0].location
});
} }
else { else {
resolve(null); resolve(null);
@ -88,7 +94,12 @@ function key (req, next): any { // checks API key and returns changed user obje
UserModel.find({key: req.query.key}).lean().exec( (err, data: any) => { // find user UserModel.find({key: req.query.key}).lean().exec( (err, data: any) => { // find user
if (err) return next(err); if (err) return next(err);
if (data.length === 1) { // one user found if (data.length === 1) { // one user found
resolve({level: data[0].level, name: data[0].name, id: data[0]._id.toString(), location: data[0].location}); resolve({
level: Object.entries(globals.levels).find(e => e[1] === data[0].level)[0],
name: data[0].name,
id: data[0]._id.toString(),
location: data[0].location
});
if (!/^\/api/m.test(req.url)){ if (!/^\/api/m.test(req.url)){
delete req.query.key; // delete query parameter to avoid interference with later validation delete req.query.key; // delete query parameter to avoid interference with later validation
} }

View File

@ -1,11 +1,12 @@
import globals from '../globals';
export default function flatten (data, keepArray = false) { // flatten object: {a: {b: true}} -> {a.b: true} export default function flatten (data, keepArray = false) { // flatten object: {a: {b: true}} -> {a.b: true}
const result = {}; const result = {};
function recurse (cur, prop) { function recurse (cur, prop) {
if (Object(cur) !== cur || Object.keys(cur).length === 0) { if (Object(cur) !== cur || Object.keys(cur).length === 0) {
result[prop] = cur; result[prop] = cur;
} }
else if (prop === 'spectrum.dpt') { else if (prop === `${globals.spectrum.spectrum}.${globals.spectrum.dpt}`) {
console.log('dpt');
result[prop + '.labels'] = cur.map(e => e[0]); result[prop + '.labels'] = cur.map(e => e[0]);
result[prop + '.values'] = cur.map(e => e[1]); result[prop + '.values'] = cur.map(e => e[1]);
} }

View File

@ -78,10 +78,10 @@ app.use(compression()); // compress responses
app.use(express.json({ limit: '5mb'})); app.use(express.json({ limit: '5mb'}));
app.use(express.urlencoded({ extended: false, limit: '5mb' })); app.use(express.urlencoded({ extended: false, limit: '5mb' }));
app.use(bodyParser.json()); app.use(bodyParser.json());
const injectionBlackList = ['$', '{', '&&', '||'];
app.use(contentFilter({ app.use(contentFilter({
urlBlackList: injectionBlackList, urlBlackList: ['$', '&&', '||'],
bodyBlackList: injectionBlackList bodyBlackList: ['$', '{', '&&', '||'],
appendFound: true
})); // filter URL query attacks })); // filter URL query attacks
app.use((err, req, res, ignore) => { // bodyParser error handling app.use((err, req, res, ignore) => { // bodyParser error handling
res.status(400).send({status: 'Invalid JSON body'}); res.status(400).send({status: 'Invalid JSON body'});

View File

@ -2,7 +2,7 @@ import mongoose from 'mongoose';
const ChangelogSchema = new mongoose.Schema({ const ChangelogSchema = new mongoose.Schema({
action: String, action: String,
collectionName: String, collection_name: String,
conditions: Object, conditions: Object,
data: Object, data: Object,
user_id: mongoose.Schema.Types.ObjectId user_id: mongoose.Schema.Types.ObjectId

View File

@ -9,10 +9,10 @@ import MaterialSupplierModel from '../models/material_suppliers';
import IdValidate from './validate/id'; import IdValidate from './validate/id';
import res400 from './validate/res400'; import res400 from './validate/res400';
import mongoose from 'mongoose'; import mongoose from 'mongoose';
import globals from '../globals';
import db from '../db'; import db from '../db';
import MaterialTemplateModel from '../models/material_template'; import MaterialTemplateModel from '../models/material_template';
import ParametersValidate from './validate/parameters'; import ParametersValidate from './validate/parameters';
import globals from '../globals';
@ -28,14 +28,14 @@ router.get('/materials', (req, res, next) => {
if (filters.hasOwnProperty('status')) { if (filters.hasOwnProperty('status')) {
if(filters.status === 'all') { if(filters.status === 'all') {
conditions = {$or: [{status: 'validated'}, {status: 'new'}]} conditions = {$or: [{status: globals.status.val}, {status: globals.status.new}]}
} }
else { else {
conditions = {status: filters.status}; conditions = {status: filters.status};
} }
} }
else { // default else { // default
conditions = {status: 'validated'}; conditions = {status: globals.status.val};
} }
MaterialModel.find(conditions).populate('group_id').populate('supplier_id').lean().exec((err, data) => { MaterialModel.find(conditions).populate('group_id').populate('supplier_id').lean().exec((err, data) => {
@ -46,7 +46,7 @@ router.get('/materials', (req, res, next) => {
}); });
}); });
router.get('/materials/:state(new|deleted)', (req, res, next) => { router.get(`/materials/:state(${globals.status.new}|${globals.status.del})`, (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'basic')) return; if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
MaterialModel.find({status: req.params.state}).populate('group_id').populate('supplier_id') MaterialModel.find({status: req.params.state}).populate('group_id').populate('supplier_id')
@ -69,7 +69,7 @@ router.get('/material/' + IdValidate.parameter(), (req, res, next) => {
} }
// deleted materials only available for dev/admin // deleted materials only available for dev/admin
if (data.status === 'deleted' && !req.auth(res, ['dev', 'admin'], 'all')) return; if (data.status === globals.status.del && !req.auth(res, ['dev', 'admin'], 'all')) return;
res.json(MaterialValidate.output(data)); res.json(MaterialValidate.output(data));
}); });
}); });
@ -105,7 +105,7 @@ router.put('/material/' + IdValidate.parameter(), (req, res, next) => {
// check for changes // check for changes
if (!_.isEqual(_.pick(IdValidate.stringify(materialData), _.keys(material)), IdValidate.stringify(material))) { if (!_.isEqual(_.pick(IdValidate.stringify(materialData), _.keys(material)), IdValidate.stringify(material))) {
material.status = 'new'; // set status to new material.status = globals.status.new; // set status to new
} }
await MaterialModel.findByIdAndUpdate(req.params.id, material, {new: true}) await MaterialModel.findByIdAndUpdate(req.params.id, material, {new: true})
@ -125,7 +125,7 @@ router.delete('/material/' + IdValidate.parameter(), (req, res, next) => {
if (data.length) { if (data.length) {
return res.status(400).json({status: 'Material still in use'}); return res.status(400).json({status: 'Material still in use'});
} }
MaterialModel.findByIdAndUpdate(req.params.id, {status:'deleted'}) MaterialModel.findByIdAndUpdate(req.params.id, {status: globals.status.del})
.log(req).populate('group_id').populate('supplier_id').lean().exec((err, data) => { .log(req).populate('group_id').populate('supplier_id').lean().exec((err, data) => {
if (err) return next(err); if (err) return next(err);
if (data) { if (data) {
@ -141,13 +141,13 @@ router.delete('/material/' + IdValidate.parameter(), (req, res, next) => {
router.put('/material/restore/' + IdValidate.parameter(), (req, res, next) => { router.put('/material/restore/' + IdValidate.parameter(), (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'basic')) return; if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
setStatus('new', req, res, next); setStatus(globals.status.new, req, res, next);
}); });
router.put('/material/validate/' + IdValidate.parameter(), (req, res, next) => { router.put('/material/validate/' + IdValidate.parameter(), (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'basic')) return; if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
setStatus('validated', req, res, next); setStatus(globals.status.val, req, res, next);
}); });
router.post('/material/new', async (req, res, next) => { router.post('/material/new', async (req, res, next) => {
@ -163,7 +163,7 @@ router.post('/material/new', async (req, res, next) => {
if (!material) return; if (!material) return;
if (!await propertiesCheck(material.properties, 'new', res, next)) return; if (!await propertiesCheck(material.properties, 'new', res, next)) return;
material.status = 'new'; // set status to new material.status = globals.status.new; // set status to new
await new MaterialModel(material).save(async (err, data) => { await new MaterialModel(material).save(async (err, data) => {
if (err) return next(err); if (err) return next(err);
db.log(req, 'materials', {_id: data._id}, data.toObject()); db.log(req, 'materials', {_id: data._id}, data.toObject());

View File

@ -1,7 +1,6 @@
import should from 'should/as-function'; import should from 'should/as-function';
import MeasurementModel from '../models/measurement'; import MeasurementModel from '../models/measurement';
import TestHelper from "../test/helper"; import TestHelper from "../test/helper";
import globals from '../globals';
describe('/measurement', () => { describe('/measurement', () => {

View File

@ -8,8 +8,8 @@ import MeasurementValidate from './validate/measurement';
import IdValidate from './validate/id'; import IdValidate from './validate/id';
import res400 from './validate/res400'; import res400 from './validate/res400';
import ParametersValidate from './validate/parameters'; import ParametersValidate from './validate/parameters';
import globals from '../globals';
import db from '../db'; import db from '../db';
import globals from '../globals';
const router = express.Router(); const router = express.Router();
@ -23,7 +23,7 @@ router.get('/measurement/' + IdValidate.parameter(), (req, res, next) => {
return res.status(404).json({status: 'Not found'}); return res.status(404).json({status: 'Not found'});
} }
// deleted measurements only available for dev/admin // deleted measurements only available for dev/admin
if (data.status === 'deleted' && !req.auth(res, ['dev', 'admin'], 'all')) return; if (data.status === globals.status.del && !req.auth(res, ['dev', 'admin'], 'all')) return;
res.json(MeasurementValidate.output(data, req)); res.json(MeasurementValidate.output(data, req));
}); });
@ -53,7 +53,7 @@ router.put('/measurement/' + IdValidate.parameter(), async (req, res, next) => {
if (measurement.values) { // fill not changed values from database if (measurement.values) { // fill not changed values from database
measurement.values = _.assign({}, data.values, measurement.values); measurement.values = _.assign({}, data.values, measurement.values);
if (!_.isEqual(measurement.values, data.values)) { if (!_.isEqual(measurement.values, data.values)) {
measurement.status = 'new'; // set status to new measurement.status = globals.status.new; // set status to new
} }
} }
@ -74,7 +74,7 @@ router.delete('/measurement/' + IdValidate.parameter(), (req, res, next) => {
return res.status(404).json({status: 'Not found'}); return res.status(404).json({status: 'Not found'});
} }
if (!await sampleIdCheck(data, req, res, next)) return; if (!await sampleIdCheck(data, req, res, next)) return;
await MeasurementModel.findByIdAndUpdate(req.params.id, {status:'deleted'}) await MeasurementModel.findByIdAndUpdate(req.params.id, {status: globals.status.del})
.log(req).lean().exec(err => { .log(req).lean().exec(err => {
if (err) return next(err); if (err) return next(err);
return res.json({status: 'OK'}); return res.json({status: 'OK'});
@ -85,13 +85,13 @@ router.delete('/measurement/' + IdValidate.parameter(), (req, res, next) => {
router.put('/measurement/restore/' + IdValidate.parameter(), (req, res, next) => { router.put('/measurement/restore/' + IdValidate.parameter(), (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'basic')) return; if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
setStatus('new', req, res, next); setStatus(globals.status.new, req, res, next);
}); });
router.put('/measurement/validate/' + IdValidate.parameter(), (req, res, next) => { router.put('/measurement/validate/' + IdValidate.parameter(), (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'basic')) return; if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
setStatus('validated', req, res, next); setStatus(globals.status.val, req, res, next);
}); });
router.post('/measurement/new', async (req, res, next) => { router.post('/measurement/new', async (req, res, next) => {
@ -104,7 +104,7 @@ router.post('/measurement/new', async (req, res, next) => {
measurement.values = await templateCheck(measurement, 'new', res, next); measurement.values = await templateCheck(measurement, 'new', res, next);
if (!measurement.values) return; if (!measurement.values) return;
measurement.status = 'new'; measurement.status = globals.status.new;
await new MeasurementModel(measurement).save((err, data) => { await new MeasurementModel(measurement).save((err, data) => {
if (err) return next(err); if (err) return next(err);
db.log(req, 'measurements', {_id: data._id}, data.toObject()); db.log(req, 'measurements', {_id: data._id}, data.toObject());

View File

@ -13,7 +13,7 @@ router.get('/', (req, res) => {
}); });
router.get('/authorized', (req, res) => { router.get('/authorized', (req, res) => {
if (!req.auth(res, globals.levels)) return; if (!req.auth(res, Object.values(globals.levels))) return;
res.json({ res.json({
status: 'Authorization successful', status: 'Authorization successful',
method: req.authDetails.method, method: req.authDetails.method,

View File

@ -17,6 +17,7 @@ import ParametersValidate from './validate/parameters';
import db from '../db'; import db from '../db';
import csv from '../helpers/csv'; import csv from '../helpers/csv';
import flatten from '../helpers/flatten'; import flatten from '../helpers/flatten';
import globals from '../globals';
const router = express.Router(); const router = express.Router();
@ -36,7 +37,7 @@ router.get('/samples', async (req, res, next) => {
if (error) return res400(error, res); if (error) return res400(error, res);
// spectral data and csv not allowed for read/write users // spectral data and csv not allowed for read/write users
if ((filters.fields.find(e => /\.dpt$/.test(e)) || filters.output !== 'json') && if ((filters.fields.find(e => e.indexOf('.' + globals.spectrum.dpt) >= 0) || filters.output !== 'json') &&
!req.auth(res, ['dev', 'admin'], 'all')) return; !req.auth(res, ['dev', 'admin'], 'all')) return;
// TODO: find a better place for these // TODO: find a better place for these
@ -260,7 +261,7 @@ router.get('/samples', async (req, res, next) => {
// count total number of items before $skip and $limit, only works when from-id is not specified and spectra are not // count total number of items before $skip and $limit, only works when from-id is not specified and spectra are not
// included // included
if (!filters.fields.find(e => /spectrum\./.test(e)) && !filters['from-id']) { if (!filters.fields.find(e => e.indexOf(globals.spectrum.spectrum + '.') >= 0) && !filters['from-id']) {
queryPtr.push({$facet: {count: [{$count: 'count'}], samples: []}}); queryPtr.push({$facet: {count: [{$count: 'count'}], samples: []}});
queryPtr = queryPtr[queryPtr.length - 1].$facet.samples; // add rest of aggregation pipeline into $facet queryPtr = queryPtr[queryPtr.length - 1].$facet.samples; // add rest of aggregation pipeline into $facet
} }
@ -328,7 +329,7 @@ router.get('/samples', async (req, res, next) => {
return res.status(400).json({status: 'Invalid body format', details: 'Measurement key not found'}); return res.status(400).json({status: 'Invalid body format', details: 'Measurement key not found'});
} }
// use different lookup methods with and without spectrum for the best performance // use different lookup methods with and without spectrum for the best performance
if (fieldsToAdd.find(e => /spectrum\./.test(e))) { if (fieldsToAdd.find(e => e.indexOf(globals.spectrum.spectrum + '.') >= 0)) {
queryPtr.push( queryPtr.push(
{$lookup: {from: 'measurements', localField: '_id', foreignField: 'sample_id', as: 'measurements'}} {$lookup: {from: 'measurements', localField: '_id', foreignField: 'sample_id', as: 'measurements'}}
); );
@ -343,22 +344,12 @@ router.get('/samples', async (req, res, next) => {
as: 'measurements' as: 'measurements'
}}); }});
} }
measurementTemplates.forEach(template => { // TODO: hard coded dpt for special treatment, change later measurementTemplates.forEach(template => {
addMeasurements(queryPtr, template); addMeasurements(queryPtr, template);
if (measurementFieldsFields.find(e => e === 'spectrum')) { if (measurementFieldsFields.find(e => e === globals.spectrum.spectrum)) {
queryPtr.push({$unwind: '$spectrum'}); queryPtr.push({$unwind: '$' + globals.spectrum.spectrum});
} }
}); });
// if (measurementFieldsFields.find(e => e === 'spectrum')) { // TODO: remove hardcoded as well
// queryPtr.push(
// {$addFields: {spectrum: {$filter: {input: '$measurements', cond: {
// $eq: ['$$this.measurement_template', measurementTemplates.filter(e => e.name === 'spectrum')[0]._id]
// }}}}},
// {$addFields: {spectrum: '$spectrum.values'}},
// {$unwind: '$spectrum'}
// );
// }
// queryPtr.push({$unset: 'measurements'});
queryPtr.push({$project: {measurements: 0}}); queryPtr.push({$project: {measurements: 0}});
} }
@ -372,7 +363,8 @@ router.get('/samples', async (req, res, next) => {
projection._id = false; projection._id = false;
} }
queryPtr.push({$project: projection}); queryPtr.push({$project: projection});
if (!fieldsToAdd.find(e => /spectrum\./.test(e))) { // use streaming when including spectrum files // use streaming when including spectrum files
if (!fieldsToAdd.find(e => e.indexOf(globals.spectrum.spectrum + '.') >= 0)) {
collection.aggregate(query).allowDiskUse(true).exec((err, data) => { collection.aggregate(query).allowDiskUse(true).exec((err, data) => {
if (err) return next(err); if (err) return next(err);
if (data[0] && data[0].count) { if (data[0] && data[0].count) {
@ -439,7 +431,7 @@ router.get('/samples', async (req, res, next) => {
} }
}); });
router.get('/samples/:state(new|deleted)', (req, res, next) => { router.get(`/samples/:state(${globals.status.new}|${globals.status.del})`, (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'basic')) return; if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
SampleModel.find({status: req.params.state}).lean().exec((err, data) => { SampleModel.find({status: req.params.state}).lean().exec((err, data) => {
@ -479,7 +471,7 @@ router.put('/sample/' + IdValidate.parameter(), (req, res, next) => {
if (!sampleData) { if (!sampleData) {
return res.status(404).json({status: 'Not found'}); return res.status(404).json({status: 'Not found'});
} }
if (sampleData.status === 'deleted') { if (sampleData.status === globals.status.del) {
return res.status(403).json({status: 'Forbidden'}); return res.status(403).json({status: 'Forbidden'});
} }
@ -527,7 +519,7 @@ router.put('/sample/' + IdValidate.parameter(), (req, res, next) => {
// check for changes // check for changes
if (!_.isEqual(_.pick(IdValidate.stringify(sampleData), _.keys(sample)), _.omit(sample, ['notes']))) { if (!_.isEqual(_.pick(IdValidate.stringify(sampleData), _.keys(sample)), _.omit(sample, ['notes']))) {
sample.status = 'new'; sample.status = globals.status.new;
} }
await SampleModel.findByIdAndUpdate(req.params.id, sample, {new: true}).log(req).lean().exec((err, data: any) => { await SampleModel.findByIdAndUpdate(req.params.id, sample, {new: true}).log(req).lean().exec((err, data: any) => {
@ -555,7 +547,7 @@ router.delete('/sample/' + IdValidate.parameter(), (req, res, next) => {
if (err) return next(err); if (err) return next(err);
// set status of associated measurements also to deleted // set status of associated measurements also to deleted
MeasurementModel.updateMany({sample_id: mongoose.Types.ObjectId(req.params.id)}, {status: 'deleted'}) MeasurementModel.updateMany({sample_id: mongoose.Types.ObjectId(req.params.id)}, {status: globals.status.del})
.log(req).lean().exec(err => { .log(req).lean().exec(err => {
if (err) return next(err); if (err) return next(err);
@ -589,7 +581,7 @@ router.get('/sample/number/:number', (req, res, next) => {
router.put('/sample/restore/' + IdValidate.parameter(), (req, res, next) => { router.put('/sample/restore/' + IdValidate.parameter(), (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'basic')) return; if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
SampleModel.findByIdAndUpdate(req.params.id, {status: 'new'}).log(req).lean().exec((err, data) => { SampleModel.findByIdAndUpdate(req.params.id, {status: globals.status.new}).log(req).lean().exec((err, data) => {
if (err) return next(err); if (err) return next(err);
if (!data) { if (!data) {
@ -602,7 +594,7 @@ router.put('/sample/restore/' + IdValidate.parameter(), (req, res, next) => {
router.put('/sample/validate/' + IdValidate.parameter(), (req, res, next) => { router.put('/sample/validate/' + IdValidate.parameter(), (req, res, next) => {
if (!req.auth(res, ['dev', 'admin'], 'basic')) return; if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
SampleModel.findByIdAndUpdate(req.params.id, {status: 'validated'}).log(req).lean().exec((err, data) => { SampleModel.findByIdAndUpdate(req.params.id, {status: globals.status.val}).log(req).lean().exec((err, data) => {
if (err) return next(err); if (err) return next(err);
if (!data) { if (!data) {
return res.status(404).json({status: 'Not found'}); return res.status(404).json({status: 'Not found'});
@ -635,7 +627,7 @@ router.post('/sample/new', async (req, res, next) => {
if (!await conditionCheck(sample.condition, 'change', res, next)) return; if (!await conditionCheck(sample.condition, 'change', res, next)) return;
} }
sample.status = 'new'; // set status to new sample.status = globals.status.new; // set status to new
if (sample.hasOwnProperty('number')) { if (sample.hasOwnProperty('number')) {
if (!await numberCheck(sample, res, next)) return; if (!await numberCheck(sample, res, next)) return;
} }
@ -885,7 +877,7 @@ async function sampleReturn (sampleData, req, res, next) {
sampleData = sampleData.toObject(); sampleData = sampleData.toObject();
// deleted samples only available for dev/admin // deleted samples only available for dev/admin
if (sampleData.status === 'deleted' && !req.auth(res, ['dev', 'admin'], 'all')) return; if (sampleData.status === globals.status.del && !req.auth(res, ['dev', 'admin'], 'all')) return;
sampleData.material = sampleData.material_id; // map data to right keys sampleData.material = sampleData.material_id; // map data to right keys
sampleData.material.group = sampleData.material.group_id.name; sampleData.material.group = sampleData.material.group_id.name;
sampleData.material.supplier = sampleData.material.supplier_id.name; sampleData.material.supplier = sampleData.material.supplier_id.name;
@ -896,8 +888,8 @@ async function sampleReturn (sampleData, req, res, next) {
sampleData.measurements = data; sampleData.measurements = data;
if (['dev', 'admin'].indexOf(req.authDetails.level) < 0) { // strip dpt values if not dev or admin if (['dev', 'admin'].indexOf(req.authDetails.level) < 0) { // strip dpt values if not dev or admin
sampleData.measurements.forEach(measurement => { sampleData.measurements.forEach(measurement => {
if (measurement.values.dpt) { if (measurement.values[globals.spectrum.dpt]) {
delete measurement.values.dpt; delete measurement.values[globals.spectrum.dpt];
} }
}); });
} }

View File

@ -60,13 +60,13 @@ router.put('/user:username([/](?!key|new).?*|/?)', async (req, res, next) => {
} }
// get current mail address to compare to given address // get current mail address to compare to given address
const {email: oldMail} = await UserModel.findOne({name: username}).lean().exec().catch(err => next(err)); const oldUserData = await UserModel.findOne({name: username}).lean().exec().catch(err => next(err));
await UserModel.findOneAndUpdate({name: username}, user, {new: true}).log(req).lean().exec( (err, data:any) => { await UserModel.findOneAndUpdate({name: username}, user, {new: true}).log(req).lean().exec( (err, data:any) => {
if (err) return next(err); if (err) return next(err);
if (data) { if (data) {
if (data.mail !== oldMail) { // mail address was changed, send notice to old address if (data.mail !== oldUserData.email) { // mail address was changed, send notice to old address
Mail.send(oldMail, 'Email change in your DeFinMa database account', Mail.send(oldUserData.email, 'Email change in your DeFinMa database account',
'Hi, <br><br> Your email address of your DeFinMa account was changed to ' + data.mail + 'Hi, <br><br> Your email address of your DeFinMa account was changed to ' + data.mail +
'<br><br>If you actually did this, just delete this email.' + '<br><br>If you actually did this, just delete this email.' +
'<br><br>If you did not change your email, someone might be messing around with your account, ' + '<br><br>If you did not change your email, someone might be messing around with your account, ' +

View File

@ -1,6 +1,7 @@
import Joi from 'joi'; import Joi from 'joi';
import IdValidate from './id'; import IdValidate from './id';
import globals from '../../globals';
export default class MaterialValidate { // validate input for material export default class MaterialValidate { // validate input for material
private static material = { private static material = {
@ -84,7 +85,7 @@ export default class MaterialValidate { // validate input for material
static query (data) { static query (data) {
return Joi.object({ return Joi.object({
status: Joi.string().valid('validated', 'new', 'all') status: Joi.string().valid(globals.status.val, globals.status.new, 'all')
}).validate(data); }).validate(data);
} }
} }

View File

@ -1,6 +1,7 @@
import Joi from 'joi'; import Joi from 'joi';
import IdValidate from './id'; import IdValidate from './id';
import globals from '../../globals';
export default class MeasurementValidate { export default class MeasurementValidate {
private static measurement = { private static measurement = {
@ -37,8 +38,8 @@ export default class MeasurementValidate {
static output (data, req) { // validate output and strip unwanted properties, returns null if not valid static output (data, req) { // validate output and strip unwanted properties, returns null if not valid
data = IdValidate.stringify(data); data = IdValidate.stringify(data);
// spectral data not allowed for read/write users // spectral data not allowed for read/write users
if (['dev', 'admin'].indexOf(req.authDetails.level) < 0 && data.values.dpt) { if (['dev', 'admin'].indexOf(req.authDetails.level) < 0 && data.values[globals.spectrum.dpt]) {
delete data.values.dpt; delete data.values[globals.spectrum.dpt];
} }
const {value, error} = Joi.object({ const {value, error} = Joi.object({
_id: IdValidate.get(), _id: IdValidate.get(),

View File

@ -36,7 +36,7 @@ export default class RootValidate { // validate input for root methods
static changelogOutput (data) { static changelogOutput (data) {
data.date = data._id.getTimestamp(); data.date = data._id.getTimestamp();
data.collection = data.collectionName; data.collection = data.collection_name;
data = IdValidate.stringify(data); data = IdValidate.stringify(data);
const {value, error} = Joi.object({ const {value, error} = Joi.object({
date: this.changelog.timestamp, date: this.changelog.timestamp,

View File

@ -53,7 +53,7 @@ export default class SampleValidate {
.min('1970-01-01T00:00:00.000Z'), .min('1970-01-01T00:00:00.000Z'),
status: Joi.string() status: Joi.string()
.valid(...globals.status) .valid(...Object.values(globals.status))
}; };
private static sortKeys = [ private static sortKeys = [
@ -68,7 +68,7 @@ export default class SampleValidate {
'material.supplier', 'material.supplier',
'material.group', 'material.group',
'material.properties.*', 'material.properties.*',
'measurements.(?!spectrum\.dpt)*' `measurements.(?!${globals.spectrum.spectrum}.${globals.spectrum.dpt})*`
]; ];
private static fieldKeys = [ private static fieldKeys = [
@ -81,7 +81,7 @@ export default class SampleValidate {
'user_id', 'user_id',
'material._id', 'material._id',
'material.numbers', 'material.numbers',
'measurements.spectrum.dpt', `measurements.${globals.spectrum.spectrum}.${globals.spectrum.dpt}`,
]; ];
static input (data, param) { // validate input, set param to 'new' to make all attributes required static input (data, param) { // validate input, set param to 'new' to make all attributes required
@ -215,12 +215,12 @@ export default class SampleValidate {
return {error: {details: [{message: 'Invalid JSON string for filter parameter'}]}, value: null} return {error: {details: [{message: 'Invalid JSON string for filter parameter'}]}, value: null}
} }
} }
const acceptedStatuses = ['validated', 'new']; const acceptedStatuses = [globals.status.val, globals.status.new];
if (dev) { // dev and admin can also access deleted samples if (dev) { // dev and admin can also access deleted samples
acceptedStatuses.push('deleted') acceptedStatuses.push(globals.status.del)
} }
return Joi.object({ return Joi.object({
status: Joi.array().items(Joi.string().valid(...acceptedStatuses)).default(['validated']), status: Joi.array().items(Joi.string().valid(...acceptedStatuses)).default([globals.status.val]),
'from-id': IdValidate.get(), 'from-id': IdValidate.get(),
'to-page': Joi.number().integer(), 'to-page': Joi.number().integer(),
'page-size': Joi.number().integer().min(1), 'page-size': Joi.number().integer().min(1),

View File

@ -21,7 +21,7 @@ export default class UserValidate { // validate input for user
.max(128), .max(128),
level: Joi.string() level: Joi.string()
.valid(...globals.levels), .valid(...Object.values(globals.levels)),
location: Joi.string() location: Joi.string()
.alphanum() .alphanum()

View File

@ -728,7 +728,7 @@
{ {
"_id" : {"$oid": "120000010000000000000000"}, "_id" : {"$oid": "120000010000000000000000"},
"action" : "PUT /sample/400000000000000000000001", "action" : "PUT /sample/400000000000000000000001",
"collectionName" : "samples", "collection_name" : "samples",
"conditions" : { "conditions" : {
"_id" : {"$oid": "400000000000000000000001"} "_id" : {"$oid": "400000000000000000000001"}
}, },
@ -742,7 +742,7 @@
{ {
"_id" : {"$oid": "120000020000000000000000"}, "_id" : {"$oid": "120000020000000000000000"},
"action" : "PUT /sample/400000000000000000000001", "action" : "PUT /sample/400000000000000000000001",
"collectionName" : "samples", "collection_name" : "samples",
"conditions" : { "conditions" : {
"_id" : {"$oid": "400000000000000000000001"} "_id" : {"$oid": "400000000000000000000001"}
}, },
@ -756,7 +756,7 @@
{ {
"_id" : {"$oid": "120000030000000000000000"}, "_id" : {"$oid": "120000030000000000000000"},
"action" : "PUT /sample/400000000000000000000001", "action" : "PUT /sample/400000000000000000000001",
"collectionName" : "samples", "collection_name" : "samples",
"conditions" : { "conditions" : {
"_id" : {"$oid": "400000000000000000000001"} "_id" : {"$oid": "400000000000000000000001"}
}, },
@ -770,7 +770,7 @@
{ {
"_id" : {"$oid": "120000040000000000000000"}, "_id" : {"$oid": "120000040000000000000000"},
"action" : "PUT /sample/400000000000000000000001", "action" : "PUT /sample/400000000000000000000001",
"collectionName" : "samples", "collection_name" : "samples",
"conditions" : { "conditions" : {
"_id" : {"$oid": "400000000000000000000001"} "_id" : {"$oid": "400000000000000000000001"}
}, },

View File

@ -104,9 +104,9 @@ export default class TestHelper {
ChangelogModel.findOne({}).sort({_id: -1}).skip(options.log.skip? options.log.skip : 0) ChangelogModel.findOne({}).sort({_id: -1}).skip(options.log.skip? options.log.skip : 0)
.lean().exec((err, data) => { // latest entry .lean().exec((err, data) => { // latest entry
if (err) return done(err); if (err) return done(err);
should(data).have.only.keys('_id', 'action', 'collectionName', 'conditions', 'data', 'user_id', '__v'); should(data).have.only.keys('_id', 'action', 'collection_name', 'conditions', 'data', 'user_id', '__v');
should(data).have.property('action', options.method.toUpperCase() + ' ' + options.url); should(data).have.property('action', options.method.toUpperCase() + ' ' + options.url);
should(data).have.property('collectionName', options.log.collection); should(data).have.property('collection_name', options.log.collection);
if (options.log.hasOwnProperty('data')) { if (options.log.hasOwnProperty('data')) {
should(data).have.property('data', options.log.data); should(data).have.property('data', options.log.data);
} }