updated to new model format
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@ -15,9 +15,6 @@
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<ng-template rbFormValidationMessage="failure">{{nameInput.errors.failure}}</ng-template>
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<ng-template rbFormValidationMessage="failure">{{nameInput.errors.failure}}</ng-template>
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<ng-template rbFormValidationMessage="required">Cannot be empty</ng-template>
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<ng-template rbFormValidationMessage="required">Cannot be empty</ng-template>
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</rb-form-input>
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</rb-form-input>
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<rb-form-input name="label" label="label" appValidate="string" [(ngModel)]="model.label" #labelInput="ngModel">
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<ng-template rbFormValidationMessage="failure">{{labelInput.errors.failure}}</ng-template>
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</rb-form-input>
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<rb-form-input name="url" label="URL" appValidate="url" required [(ngModel)]="model.url" #urlInput="ngModel">
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<rb-form-input name="url" label="URL" appValidate="url" required [(ngModel)]="model.url" #urlInput="ngModel">
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<ng-template rbFormValidationMessage="failure">{{urlInput.errors.failure}}</ng-template>
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<ng-template rbFormValidationMessage="failure">{{urlInput.errors.failure}}</ng-template>
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<ng-template rbFormValidationMessage="required">Cannot be empty</ng-template>
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<ng-template rbFormValidationMessage="required">Cannot be empty</ng-template>
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@ -31,7 +28,6 @@
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<rb-table class="space-above">
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<rb-table class="space-above">
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<tr>
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<tr>
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<th>Name</th>
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<th>Name</th>
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<th>Label</th>
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<th>URL</th>
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<th>URL</th>
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<th></th>
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<th></th>
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<th></th>
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<th></th>
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@ -41,7 +37,6 @@
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<tr><th>{{group.group}}</th><th></th><th></th><th></th><th></th></tr>
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<tr><th>{{group.group}}</th><th></th><th></th><th></th><th></th></tr>
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<tr *ngFor="let modelItem of group.models">
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<tr *ngFor="let modelItem of group.models">
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<td>{{modelItem.name}}</td>
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<td>{{modelItem.name}}</td>
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<td>{{modelItem.label}}</td>
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<td>{{modelItem.url}}</td>
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<td>{{modelItem.url}}</td>
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<td>
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<td>
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<span class="rb-ic rb-ic-edit clickable"
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<span class="rb-ic rb-ic-edit clickable"
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@ -4,7 +4,6 @@ export class ModelItemModel extends BaseModel {
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group = '';
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group = '';
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models = [{
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models = [{
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name: '',
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name: '',
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url: '',
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url: ''
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label: ''
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}];
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}];
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}
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}
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@ -13,21 +13,17 @@
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<div *ngIf="result" class="result" [@inOut]>
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<div *ngIf="result" class="result" [@inOut]>
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<ng-container *ngIf="multipleSamples; else singleSampleResult">
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<ng-container *ngIf="multipleSamples; else singleSampleResult">
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<h4 *ngFor="let prediction of result.predictions; index as i">
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<h4 *ngFor="let prediction of result.predictions; index as i">
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{{spectrumNames[i]}}: {{prediction}} {{activeGroup.models[activeModelIndex].label}}
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{{spectrumNames[i]}}: {{prediction}}<a [routerLink]='"."' fragment="disclaimer"><sup>#</sup></a>
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<a [routerLink]='"."' fragment="disclaimer"><sup>#</sup></a>
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</h4>
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</h4>
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</ng-container>
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</ng-container>
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<ng-template #singleSampleResult>
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<ng-template #singleSampleResult>
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<h4>
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<h4>
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Average result: {{result.meanPrediction}} {{activeGroup.models[activeModelIndex].label}}
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Average result: {{result.mean}}<a [routerLink]='"."' fragment="disclaimer"><sup>#</sup></a>
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<a [routerLink]='"."' fragment="disclaimer"><sup>#</sup></a>,
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standard deviation: {{result.std}}<a [routerLink]='"."' fragment="disclaimer"><sup>#</sup></a>
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</h4>
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</h4>
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<a href="javascript:" class="rb-details-toggle" rbDetailsToggle #triggerDetails="rbDetailsToggle">Details</a>
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<a href="javascript:" class="rb-details-toggle" rbDetailsToggle #triggerDetails="rbDetailsToggle">Details</a>
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<div *ngIf="triggerDetails.open" class="space-below">
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<div *ngIf="triggerDetails.open" class="space-below">
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<p *ngFor="let prediction of result.predictions; index as i">
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<p *ngFor="let prediction of result.predictions; index as i">
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{{spectrumNames[i]}}: {{prediction}} {{activeGroup.models[activeModelIndex].label}}
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{{spectrumNames[i]}}: {{prediction}}<a [routerLink]='"."' fragment="disclaimer"><sup>#</sup></a>
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<a [routerLink]='"."' fragment="disclaimer"><sup>#</sup></a>
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</p>
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</p>
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</div>
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</div>
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</ng-template>
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</ng-template>
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@ -3,15 +3,10 @@ import {ChartOptions} from 'chart.js';
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import {ApiService} from '../services/api.service';
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import {ApiService} from '../services/api.service';
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import {animate, style, transition, trigger} from '@angular/animations';
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import {animate, style, transition, trigger} from '@angular/animations';
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import cloneDeep from 'lodash/cloneDeep';
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import cloneDeep from 'lodash/cloneDeep';
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import omit from 'lodash/omit';
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import {DataService} from '../services/data.service';
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import {DataService} from '../services/data.service';
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import {ModelItemModel} from '../models/model-item.model';
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import {ModelItemModel} from '../models/model-item.model';
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import {HttpClient} from '@angular/common/http';
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interface PredictionResult {
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meanPrediction: string;
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std: string;
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predictions: string[];
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}
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@Component({
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@Component({
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selector: 'app-prediction',
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selector: 'app-prediction',
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@ -34,7 +29,7 @@ interface PredictionResult {
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})
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})
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export class PredictionComponent implements OnInit {
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export class PredictionComponent implements OnInit {
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result: PredictionResult;
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result: {predictions: string[], mean: string};
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loading = false;
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loading = false;
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activeGroup: ModelItemModel = new ModelItemModel();
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activeGroup: ModelItemModel = new ModelItemModel();
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activeModelIndex = 0;
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activeModelIndex = 0;
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@ -104,9 +99,16 @@ export class PredictionComponent implements OnInit {
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loadPrediction() {
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loadPrediction() {
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this.loading = true;
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this.loading = true;
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console.log(this.activeModelIndex);
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this.api.post<any>(this.activeGroup.models[this.activeModelIndex].url, this.flattenedSpectra, data => {
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this.api.post<PredictionResult>(this.activeGroup.models[this.activeModelIndex].url, this.flattenedSpectra, data => {
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this.result = {
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this.result = data;
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predictions: Object.entries(omit(data, ['mean', 'std', 'label']))
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.map((p: any) => p[1].map(e => `${p[0]}: ${e} ${data.label[p[0]]}`))
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.reduce((s, e) => s.map((el, i) => this.clip(el) + ', ' + e[i])),
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mean: Object.keys(data.mean).map(e =>
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this.clip(`${e}: ${data.mean[e]} ${data.label[e]}`) + (data.std[e] !== '' ? ` (standard deviation: ${data.std[e]})` : '')
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).join(', ')
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};
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console.log(this.result);
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this.loading = false;
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this.loading = false;
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});
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});
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}
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}
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@ -115,4 +117,8 @@ export class PredictionComponent implements OnInit {
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this.activeGroup = this.d.arr.modelGroups[index];
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this.activeGroup = this.d.arr.modelGroups[index];
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this.result = undefined;
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this.result = undefined;
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}
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}
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clip(str) { // clip spaces at start and end
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return str.replace(/^\s*(.*?)\s*$/, '$1');
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}
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}
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}
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@ -238,7 +238,7 @@
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[(ngModel)]="measurement.measurement_template"
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[(ngModel)]="measurement.measurement_template"
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(ngModelChange)="clearMeasurement(gIndex, mIndex)">
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(ngModelChange)="clearMeasurement(gIndex, mIndex)">
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<option [value]="sample.condition.condition_template">
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<option [value]="sample.condition.condition_template">
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{{d.id.measurementTemplates[measurement.measurement_template].name}} - current
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{{d.id.measurementTemplates[measurement.measurement_template].name}} - old
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</option>
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</option>
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<option *ngFor="let m of d.latest.measurementTemplates" [value]="m._id">{{m.name}}</option>
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<option *ngFor="let m of d.latest.measurementTemplates" [value]="m._id">{{m.name}}</option>
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</rb-form-select>
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</rb-form-select>
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@ -330,7 +330,7 @@
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<ng-template #modalDeleteConfirm>
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<ng-template #modalDeleteConfirm>
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<rb-alert alertTitle="Are you sure?" type="danger" [okBtnLabel]="'Delete sample' + (samples.length > 1 ? 's' : '')"
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<rb-alert alertTitle="Are you sure?" type="danger" [okBtnLabel]="'Delete sample' + (samples.length > 1 ? 's' : '')"
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cancelBtnLabel="Cancel">
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cancelBtnLabel="Cancel">
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Do you really want to delete {{samples.length > 1 ? 'these samples' : 'this sample'}}?
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Do you really want to delete {{(samples.length > 1 ? 'samples ' : 'sample ') + sampleNames()}}?
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</rb-alert>
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</rb-alert>
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</ng-template>
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</ng-template>
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@ -613,6 +613,10 @@ export class SampleComponent implements OnInit, AfterContentChecked {
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return this.sampleReferenceList.bind(this);
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return this.sampleReferenceList.bind(this);
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}
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}
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sampleNames() {
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return this.samples.map(e => e.number).join(', ');
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}
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uniqueCfValues(index) { // returns all names until index for unique check
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uniqueCfValues(index) { // returns all names until index for unique check
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return this.customFields ? this.customFields.slice(0, index).map(e => e[0]) : [];
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return this.customFields ? this.customFields.slice(0, index).map(e => e[0]) : [];
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}
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}
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