Automate process with inotifywait
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23
OpusData.R
23
OpusData.R
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#!/usr/bin/env Rscript
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#!/usr/bin/env Rscript
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# Attach package to workspace, execute with every new session
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# Attach packages to workspace, execute with every new session
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source("ReadOpus.R")
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source("ReadOpus.R")
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# Determine file path
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# Determine file path
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path <- paste(getwd(), "/OPUS/", sep = "")
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path <- paste0(getwd(), "/OPUS/")
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file_name <- commandArgs(trailingOnly = TRUE)[1]
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file_name <- commandArgs(trailingOnly = TRUE)[1]
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file_path <- paste(path, file_name, sep = "")
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file_path <- paste(path, file_name, sep = "")
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# Convert opus binary file into dataframe
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# Convert opus binary file into dataframe
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data <- read_opus_univ(file_path, 5)
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data <- read_opus_univ(file_path, 5)
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# Set working directory to path where the result file should appear
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# Replace last "." with "_", add ".DPT"
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setwd(paste(path, "../DPT", sep = ""))
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file_name <- paste0(sub(".([^.]*)$", "_\\1", file_name), ".DPT")
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# Replace last "." with "_", add ".DPT" and create file
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# Determine target, where the result should appear
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file_name <- paste(sub(".([^.]*)$", "_\\1", file_name), ".DPT", sep = "")
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target_path <- paste0(path, "../DPT/", file_name)
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file.create(file_name)
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# Create file
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file.create(target_path)
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# Fill file with dataframe
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# Fill file with dataframe
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write.table(data, file_name, row.names = FALSE, col.names = FALSE, sep = ",")
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write.table(data, target_path, row.names = FALSE, col.names = FALSE, sep = ",")
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# Call python script
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system(paste('python3 transferData.py', file_name))
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#!/bin/bash
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#!/bin/bash
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inotifywait -m OPUS -e create -e moved_to |
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inotifywait -m OPUS -e create -e moved_to |
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while read fpath action file; do
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while read fpath action file; do
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echo "The file '$file' appeard in directory '$fpath' via '$action'"
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Rscript OpusData.R $file
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Rscript OpusData.R $file
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done
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done
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34
transferData.py
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34
transferData.py
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import requests
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import sys
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file_name = sys.argv[1]
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dptFile = open("DPT/" + file_name, 'r')
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lines = dptFile.readlines()
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jsonString = '['
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# Concatenate data
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for line in lines:
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content = line.split(',')
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jsonString += '[' + str(content[0]) + ', ' + str(content[1].strip()) + '],'
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# Remove last comma
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jsonString = jsonString[:-1]
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jsonString += ']'
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headers = {
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'accept': '*/*',
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'Authorization': 'Basic ZGVmaW5tYV9jb25uZWN0X1JuZ0B0YTJlMzViYjkyZDRjNDkyZDgwMjdkNDMyOTMxNzBkMDRfaHViOkRlZmlubWE=',
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'Content-Type': 'application/json',
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}
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data = '{"topic":"definma_connect/Rng/things/twin/commands/modify", "path":"features/data","value":{"properties":' + jsonString + '}}'
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print(data)
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# Convert jsonString to dictionary
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#jsonDict = json.loads(jsonString)
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# Write Json into file
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#with open(file_name, 'w') as jsonFile:
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# json.dump(jsonDict, jsonFile)
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