42 lines
1.2 KiB
R
42 lines
1.2 KiB
R
#!/usr/bin/env Rscript
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# Package installation, execute once
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#install.packages("remotes")
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#remotes::install_github("philipp-baumann/simplerspec")
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# Attach package to workspace, execute with every new session
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library("simplerspec")
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# Determine file path
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path <- paste(getwd(), "/OPUS/", sep = "")
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file_name <- commandArgs(trailingOnly = TRUE)[1]
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file_path <- paste(path, file_name, sep = "")
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# Convert opus binary file into extractable data
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data <- read_opus_univ(file_path, extract = "spc",atm_comp_minus4offset = FALSE)
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#Cut the beginning (ugly solution)
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#file_path <- substr(file_path, start = 10, stop = nchar(file_path))
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# Extract data
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data_x_values <- data[[file_name]]$wavenumbers
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data_y_values <- as.numeric(data[[file_name]]$spc[1,])
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# Set working directory to path where the result file should appear
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setwd(paste(path, "..\\DPT", sep = ""))
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# Convert data into dataframe
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data <- data.frame(data_x_values, data_y_values, row.names = NULL)
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# Replace last "." with "_", add ".DPT" and create file
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file_name <- paste(sub(".([^.]*)$", "_\\1", file_name), ".DPT", sep = "")
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file.create(file_name)
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# Fill file with dataframe
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write.table(data, file_name, row.names = FALSE, col.names = FALSE, sep=",")
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