Merge pull request #21 in ~VLE2FE/dfop-api from develop to master
* commit '5abad59a0e80cf8f543d9ee2af10922c35ea5d10': improved mail service removed maintain user, constrained spctra access fixed testing cache
This commit is contained in:
		
							
								
								
									
										36
									
								
								.idea/dictionaries/VLE2FE.xml
									
									
									
										generated
									
									
									
								
							
							
						
						
									
										36
									
								
								.idea/dictionaries/VLE2FE.xml
									
									
									
										generated
									
									
									
								
							@@ -1,12 +1,48 @@
 | 
			
		||||
<component name="ProjectDictionaryState">
 | 
			
		||||
  <dictionary name="VLE2FE">
 | 
			
		||||
    <words>
 | 
			
		||||
      <w>akro</w>
 | 
			
		||||
      <w>amodel</w>
 | 
			
		||||
      <w>anwendungsbeschränkt</w>
 | 
			
		||||
      <w>batchgranulate</w>
 | 
			
		||||
      <w>bcrypt</w>
 | 
			
		||||
      <w>bnpd</w>
 | 
			
		||||
      <w>cfenv</w>
 | 
			
		||||
      <w>colordesignatiomsuppl</w>
 | 
			
		||||
      <w>colordesignationsuppl</w>
 | 
			
		||||
      <w>contentin</w>
 | 
			
		||||
      <w>definma</w>
 | 
			
		||||
      <w>dfopdb</w>
 | 
			
		||||
      <w>dosiergeschw</w>
 | 
			
		||||
      <w>dpts</w>
 | 
			
		||||
      <w>einspritzgeschw</w>
 | 
			
		||||
      <w>frameguard</w>
 | 
			
		||||
      <w>functionlink</w>
 | 
			
		||||
      <w>glassfibrecontent</w>
 | 
			
		||||
      <w>isin</w>
 | 
			
		||||
      <w>janedoe</w>
 | 
			
		||||
      <w>johnnydoe</w>
 | 
			
		||||
      <w>kfingew</w>
 | 
			
		||||
      <w>latamid</w>
 | 
			
		||||
      <w>lati</w>
 | 
			
		||||
      <w>lyucy</w>
 | 
			
		||||
      <w>materialnumber</w>
 | 
			
		||||
      <w>pagesize</w>
 | 
			
		||||
      <w>pnach</w>
 | 
			
		||||
      <w>preaged</w>
 | 
			
		||||
      <w>reinforcementmaterial</w>
 | 
			
		||||
      <w>reinforcingmaterial</w>
 | 
			
		||||
      <w>samplenumber</w>
 | 
			
		||||
      <w>sdpt</w>
 | 
			
		||||
      <w>signalviolet</w>
 | 
			
		||||
      <w>solvay</w>
 | 
			
		||||
      <w>spaceless</w>
 | 
			
		||||
      <w>stabwn</w>
 | 
			
		||||
      <w>stanyl</w>
 | 
			
		||||
      <w>stringin</w>
 | 
			
		||||
      <w>testcomment</w>
 | 
			
		||||
      <w>ultramid</w>
 | 
			
		||||
      <w>vorgealtert</w>
 | 
			
		||||
    </words>
 | 
			
		||||
  </dictionary>
 | 
			
		||||
</component>
 | 
			
		||||
							
								
								
									
										1
									
								
								.idea/inspectionProfiles/Project_Default.xml
									
									
									
										generated
									
									
									
								
							
							
						
						
									
										1
									
								
								.idea/inspectionProfiles/Project_Default.xml
									
									
									
										generated
									
									
									
								
							@@ -2,6 +2,7 @@
 | 
			
		||||
  <profile version="1.0">
 | 
			
		||||
    <option name="myName" value="Project Default" />
 | 
			
		||||
    <inspection_tool class="JSUnfilteredForInLoop" enabled="false" level="WARNING" enabled_by_default="false" />
 | 
			
		||||
    <inspection_tool class="LongLine" enabled="true" level="WARNING" enabled_by_default="true" />
 | 
			
		||||
    <inspection_tool class="ReservedWordUsedAsNameJS" enabled="false" level="WARNING" enabled_by_default="false" />
 | 
			
		||||
  </profile>
 | 
			
		||||
</component>
 | 
			
		||||
							
								
								
									
										50
									
								
								api/api.yaml
									
									
									
									
									
								
							
							
						
						
									
										50
									
								
								api/api.yaml
									
									
									
									
									
								
							@@ -5,28 +5,35 @@ info:
 | 
			
		||||
  title: Digital fingerprint of plastics - API
 | 
			
		||||
  version: 1.0.0
 | 
			
		||||
  description: |
 | 
			
		||||
    This API gives access to the project database.<br>
 | 
			
		||||
    This **API** gives access to the project database.
 | 
			
		||||
 | 
			
		||||
    Access is restricted. Authentication can be obtained with HTTP Basic Auth using username and password.
 | 
			
		||||
    Data access methods can also be accessed using an API key at the URL ending like ?key=xxx<br>
 | 
			
		||||
    Data access methods can also be accessed using an API key at the URL ending like ?key=xxx
 | 
			
		||||
 | 
			
		||||
    The description lists available authentication methods, also the locks of each method close correspondingly
 | 
			
		||||
    if the entered authentication is allowed.<br><br>
 | 
			
		||||
    There are a number of different user levels: <br>
 | 
			
		||||
    <ul>
 | 
			
		||||
      <li>read: read access to the samples database</li>
 | 
			
		||||
      <li>write: write access to the samples database, users can change only the values they created</li>
 | 
			
		||||
      <li>maintain: functions like changing templates, validating data, changing values of others</li>
 | 
			
		||||
      <li>dev: handling machine learning models</li>
 | 
			
		||||
      <li>admin: user administration</li>
 | 
			
		||||
    </ul>
 | 
			
		||||
    if the entered authentication is allowed.
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
    There are a number of different user levels:
 | 
			
		||||
 | 
			
		||||
    |       | read sample data | add samples/edit own | read spectral data | edit other's data | maintain templates | edit users |
 | 
			
		||||
    |:-----:|:----------------:|:--------------------:|:------------------:|:-----------------:|:------------------:|:----------:|
 | 
			
		||||
    | read  | yes              | no                   | no                 | no                | no                 | no         |
 | 
			
		||||
    | write | yes              | yes                  | no                 | no                | no                 | no         |
 | 
			
		||||
    | dev   | yes              | yes                  | yes                | yes               | yes                | no         |
 | 
			
		||||
    | admin | yes              | yes                  | yes                | yes               | yes                | yes        |
 | 
			
		||||
 | 
			
		||||
    Password policy:
 | 
			
		||||
    <ul>
 | 
			
		||||
      <li>at least one digit</li>
 | 
			
		||||
      <li>at least one lower case letter</li>
 | 
			
		||||
      <li>at least one upper case letter</li>
 | 
			
		||||
      <li>at least one of the following special characters: !"#%&'()*+,-./:;<=>?@[\]^_`{|}~</li>
 | 
			
		||||
      <li>no whitespace</li>
 | 
			
		||||
      <li>at least 8 characters</li>
 | 
			
		||||
    </ul>
 | 
			
		||||
 | 
			
		||||
    - at least one digit
 | 
			
		||||
    - at least one lower case letter
 | 
			
		||||
    - at least one upper case letter
 | 
			
		||||
    - at least one of the following special characters: !"#%&'()*+,-./:;<=>?@[\]^_`{|}~
 | 
			
		||||
    - no whitespace
 | 
			
		||||
    - at least 8 characters
 | 
			
		||||
 | 
			
		||||
    <br>
 | 
			
		||||
 | 
			
		||||
  x-doc: |
 | 
			
		||||
    status:
 | 
			
		||||
    <ul>
 | 
			
		||||
@@ -34,8 +41,9 @@ info:
 | 
			
		||||
      <li>0: newly added/changed</li>
 | 
			
		||||
      <li>10: validated</li>
 | 
			
		||||
    </ul>
 | 
			
		||||
    <a href="https://sourcecode.socialcoding.bosch.com/users/vle2fe/repos/dfop-api/">Bitbucket repository</a>
 | 
			
		||||
# TODO: Link to new documentation page
 | 
			
		||||
    <a href="https://sourcecode.socialcoding.bosch.com/users/vle2fe/repos/dfop-api/">Bitbucket repository API</a>
 | 
			
		||||
    <a href="https://sourcecode.socialcoding.bosch.com/users/vle2fe/repos/dfop-ui/">Bitbucket repository UI</a>
 | 
			
		||||
    <a href="https://definma.apps.de1.bosch-iot-cloud.com/documentation">Documentation page</a>
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
servers:
 | 
			
		||||
 
 | 
			
		||||
@@ -1,7 +1,7 @@
 | 
			
		||||
/materials:
 | 
			
		||||
  get:
 | 
			
		||||
    summary: lists all materials
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin'
 | 
			
		||||
    x-doc: returns only materials with status 10
 | 
			
		||||
    tags:
 | 
			
		||||
      - /material
 | 
			
		||||
@@ -31,7 +31,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/State'
 | 
			
		||||
  get:
 | 
			
		||||
    summary: lists all new/deleted materials
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: dev, admin'
 | 
			
		||||
    x-doc: returns materials with status 0/-1
 | 
			
		||||
    tags:
 | 
			
		||||
      - /material
 | 
			
		||||
@@ -54,8 +54,8 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Id'
 | 
			
		||||
  get:
 | 
			
		||||
    summary: get material details
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    x-doc: deleted samples are available only for maintain/admin
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin'
 | 
			
		||||
    x-doc: deleted samples are available only for dev/admin
 | 
			
		||||
    tags:
 | 
			
		||||
      - /material
 | 
			
		||||
    responses:
 | 
			
		||||
@@ -73,7 +73,7 @@
 | 
			
		||||
        $ref: 'api.yaml#/components/responses/500'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: change material
 | 
			
		||||
    description: 'Auth: basic, levels: write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: write, dev, admin'
 | 
			
		||||
    x-doc: status is reset to 0 on any changes, deleted samples cannot be changed
 | 
			
		||||
    tags:
 | 
			
		||||
      - /material
 | 
			
		||||
@@ -104,7 +104,7 @@
 | 
			
		||||
        $ref: 'api.yaml#/components/responses/500'
 | 
			
		||||
  delete:
 | 
			
		||||
    summary: delete material
 | 
			
		||||
    description: 'Auth: basic, levels: write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: write, dev, admin'
 | 
			
		||||
    x-doc: sets status to -1
 | 
			
		||||
    tags:
 | 
			
		||||
      - /material
 | 
			
		||||
@@ -129,7 +129,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Id'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: restore material
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: dev, admin'
 | 
			
		||||
    x-doc: status is set to 0
 | 
			
		||||
    tags:
 | 
			
		||||
      - /material
 | 
			
		||||
@@ -152,7 +152,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Id'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: restore material
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: dev, admin'
 | 
			
		||||
    x-doc: status is set to 10
 | 
			
		||||
    tags:
 | 
			
		||||
      - /material
 | 
			
		||||
@@ -173,7 +173,7 @@
 | 
			
		||||
/material/new:
 | 
			
		||||
  post:
 | 
			
		||||
    summary: add material
 | 
			
		||||
    description: 'Auth: basic, levels: write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: write, dev, admin'
 | 
			
		||||
    x-doc: 'Adds status: 0 automatically'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /material
 | 
			
		||||
@@ -204,7 +204,7 @@
 | 
			
		||||
/material/groups:
 | 
			
		||||
  get:
 | 
			
		||||
    summary: list all existing material groups
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /material
 | 
			
		||||
    responses:
 | 
			
		||||
@@ -227,7 +227,7 @@
 | 
			
		||||
/material/suppliers:
 | 
			
		||||
  get:
 | 
			
		||||
    summary: list all existing material suppliers
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /material
 | 
			
		||||
    responses:
 | 
			
		||||
 
 | 
			
		||||
@@ -3,8 +3,8 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Id'
 | 
			
		||||
  get:
 | 
			
		||||
    summary: measurement values by id
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    x-doc: deleted samples are available only for maintain/admin
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin, spectral data can only be accessed by dev and admin'
 | 
			
		||||
    x-doc: deleted samples are available only for dev/admin
 | 
			
		||||
    tags:
 | 
			
		||||
      - /measurement
 | 
			
		||||
    responses:
 | 
			
		||||
@@ -24,7 +24,7 @@
 | 
			
		||||
        $ref: 'api.yaml#/components/responses/500'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: change measurement
 | 
			
		||||
    description: 'Auth: basic, levels: write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: write, dev, admin'
 | 
			
		||||
    x-doc: status is reset to 0 on any changes, deleted measurements cannot be edited
 | 
			
		||||
    tags:
 | 
			
		||||
      - /measurement
 | 
			
		||||
@@ -57,7 +57,7 @@
 | 
			
		||||
        $ref: 'api.yaml#/components/responses/500'
 | 
			
		||||
  delete:
 | 
			
		||||
    summary: delete measurement
 | 
			
		||||
    description: 'Auth: basic, levels: write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: write, dev, admin'
 | 
			
		||||
    x-doc: sets status to -1
 | 
			
		||||
    tags:
 | 
			
		||||
      - /measurement
 | 
			
		||||
@@ -82,7 +82,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Id'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: restore measurement
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: dev, admin'
 | 
			
		||||
    x-doc: status is set to 0
 | 
			
		||||
    tags:
 | 
			
		||||
      - /measurement
 | 
			
		||||
@@ -105,7 +105,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Id'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: set measurement status to validated
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: dev, admin'
 | 
			
		||||
    x-doc: status is set to 10
 | 
			
		||||
    tags:
 | 
			
		||||
      - /measurement
 | 
			
		||||
@@ -126,7 +126,7 @@
 | 
			
		||||
/measurement/new:
 | 
			
		||||
  post:
 | 
			
		||||
    summary: add measurement
 | 
			
		||||
    description: 'Auth: basic, levels: write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: write, dev, admin'
 | 
			
		||||
    x-doc: 'Adds status: 0 automatically'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /measurement
 | 
			
		||||
 
 | 
			
		||||
@@ -21,7 +21,7 @@
 | 
			
		||||
/authorized:
 | 
			
		||||
  get:
 | 
			
		||||
    summary: Checks authorization
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /
 | 
			
		||||
    responses:
 | 
			
		||||
@@ -40,6 +40,8 @@
 | 
			
		||||
                level:
 | 
			
		||||
                  type: string
 | 
			
		||||
                  example: read
 | 
			
		||||
                user_id:
 | 
			
		||||
                  $ref: 'api.yaml#/components/schemas/Id'
 | 
			
		||||
      401:
 | 
			
		||||
        $ref: 'api.yaml#/components/responses/401'
 | 
			
		||||
      500:
 | 
			
		||||
@@ -67,7 +69,9 @@
 | 
			
		||||
      example: 30
 | 
			
		||||
  get:
 | 
			
		||||
    summary: get changelog
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin<br>Displays all logs older than timestamp, sorted by date descending, page defaults to 0, pagesize defaults to 25<br>Avoid using high page numbers for older logs, better use an older timestamp'
 | 
			
		||||
    description: 'Auth: basic, levels: dev, admin<br>Displays all logs older than timestamp, sorted by date descending,
 | 
			
		||||
    page defaults to 0, pagesize defaults to 25<br>Avoid using high page numbers for older logs, better use an older
 | 
			
		||||
    timestamp'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /
 | 
			
		||||
    responses:
 | 
			
		||||
 
 | 
			
		||||
@@ -1,8 +1,9 @@
 | 
			
		||||
/samples:
 | 
			
		||||
  get:
 | 
			
		||||
    summary: all samples in overview
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    x-doc: 'Limitations: paging and csv output does not work when including the spectrum measurement fields as well as the returned number of total samples'
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin, spectral data can only be accessed by dev and admin'
 | 
			
		||||
    x-doc: 'Limitations: paging and csv output does not work when including the spectrum measurement fields as well as
 | 
			
		||||
    the returned number of total samples'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
    parameters:
 | 
			
		||||
@@ -19,7 +20,8 @@
 | 
			
		||||
          type: string
 | 
			
		||||
        example: 5ea0450ed851c30a90e70894
 | 
			
		||||
      - name: to-page
 | 
			
		||||
        description: relative change of pages, use negative values to get back, defaults to 0, works only together with page-size
 | 
			
		||||
        description: 'relative change of pages, use negative values to get back, defaults to 0, works only together with
 | 
			
		||||
        page-size'
 | 
			
		||||
        in: query
 | 
			
		||||
        schema:
 | 
			
		||||
          type: string
 | 
			
		||||
@@ -43,7 +45,8 @@
 | 
			
		||||
          type: boolean
 | 
			
		||||
        example: false
 | 
			
		||||
      - name: fields[]
 | 
			
		||||
        description: the fields to include in the output as array, defaults to ['_id','number','type','batch','material_id','color','condition','note_id','user_id','added']
 | 
			
		||||
        description: "the fields to include in the output as array, defaults to ['_id', 'number', 'type',
 | 
			
		||||
        'batch', 'material_id', 'color', 'condition', 'note_id', 'user_id', 'added']"
 | 
			
		||||
        in: query
 | 
			
		||||
        schema:
 | 
			
		||||
         type: array
 | 
			
		||||
@@ -51,19 +54,23 @@
 | 
			
		||||
           type: string
 | 
			
		||||
        example: ['number', 'batch']
 | 
			
		||||
      - name: filters[]
 | 
			
		||||
        description: "the filters to apply as an array of URIComponent encoded objects in the form {mode: 'eq/ne/lt/lte/gt/gte/in/nin', field: 'material.m', values: ['15']} using encodeURIComponent(JSON.stringify({}))"
 | 
			
		||||
        description: "the filters to apply as an array of URIComponent encoded objects in the form {mode:
 | 
			
		||||
        'eq/ne/lt/lte/gt/gte/in/nin', field: 'material.m', values: ['15']} using encodeURIComponent(JSON.stringify({}))"
 | 
			
		||||
        in: query
 | 
			
		||||
        schema:
 | 
			
		||||
         type: array
 | 
			
		||||
         items:
 | 
			
		||||
           type: string
 | 
			
		||||
        example: ["%7B%22mode%22%3A%22eq%22%2C%22field%22%3A%22material.m%22%2C%22values%22%3A%5B%2215%22%5D%7D", "%7B%22mode%22%3A%22isin%22%2C%22field%22%3A%22material.supplier%22%2C%22values%22%3A%5B%22BASF%22%2C%22DSM%22%5D%7D"]
 | 
			
		||||
        example: '["%7B%22mode%22%3A%22eq%22%2C%22field%22%3A%22material.m%22%2C%22values%22%3A%5B%2215%22%5D%7D",
 | 
			
		||||
        "%7B%22mode%22%3A%22isin%22%2C%22field%22%3A%22material.supplier%22%2C%22values%22%3A%5B%22BASF%22%2C%22DSM%22
 | 
			
		||||
        %5D%7D"]'
 | 
			
		||||
    responses:
 | 
			
		||||
      200:
 | 
			
		||||
        description: samples overview (if the csv parameter is set, this is in CSV instead of JSON format)
 | 
			
		||||
        headers:
 | 
			
		||||
          x-total-items:
 | 
			
		||||
            description: Total number of available items when from-id is not specified and spectrum field is not included
 | 
			
		||||
            description: Total number of available items when from-id is not specified and spectrum field is not
 | 
			
		||||
              included
 | 
			
		||||
            schema:
 | 
			
		||||
              type: integer
 | 
			
		||||
              example: 243
 | 
			
		||||
@@ -87,7 +94,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/State'
 | 
			
		||||
  get:
 | 
			
		||||
    summary: all new/deleted samples in overview
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: admin'
 | 
			
		||||
    x-doc: returns only samples with status 0/-1
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
@@ -108,7 +115,7 @@
 | 
			
		||||
/samples/count:
 | 
			
		||||
  get:
 | 
			
		||||
    summary: total number of samples
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
    responses:
 | 
			
		||||
@@ -129,8 +136,9 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Id'
 | 
			
		||||
  get:
 | 
			
		||||
    summary: sample details
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin<br>Returns validated as well as new measurements'
 | 
			
		||||
    x-doc: deleted samples are available only for maintain/admin
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin, spectral data can only be accessed by dev and admin<br>
 | 
			
		||||
    Returns validated as well as new measurements'
 | 
			
		||||
    x-doc: deleted samples are available only for dev/admin
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
    responses:
 | 
			
		||||
@@ -150,7 +158,8 @@
 | 
			
		||||
        $ref: 'api.yaml#/components/responses/500'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: change sample
 | 
			
		||||
    description: 'Auth: basic, levels: write, maintain, dev, admin <br>Only maintain and admin are allowed to edit samples created by another user'
 | 
			
		||||
    description: 'Auth: basic, levels: write, dev, admin <br>
 | 
			
		||||
    Only dev and admin are allowed to edit samples created by another user'
 | 
			
		||||
    x-doc: status is reset to 0 on any changes, deleted samples cannot be changed
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
@@ -181,8 +190,10 @@
 | 
			
		||||
        $ref: 'api.yaml#/components/responses/500'
 | 
			
		||||
  delete:
 | 
			
		||||
    summary: delete sample
 | 
			
		||||
    description: 'Auth: basic, levels: write, maintain, dev, admin <br>Only maintain and admin are allowed to edit samples created by another user'
 | 
			
		||||
    x-doc: sets status to -1, notes and references to this sample are also kept, only note_fields are updated accordingly
 | 
			
		||||
    description: 'Auth: basic, levels: write, dev, admin <br>
 | 
			
		||||
    Only dev and admin are allowed to edit samples created by another user'
 | 
			
		||||
    x-doc: sets status to -1, notes and references to this sample are also kept, only note_fields are updated
 | 
			
		||||
      accordingly
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
    security:
 | 
			
		||||
@@ -206,8 +217,9 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Number'
 | 
			
		||||
  get:
 | 
			
		||||
    summary: sample details
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin<br>Returns validated as well as new measurements'
 | 
			
		||||
    x-doc: deleted samples are available only for maintain/admin
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin, spectral data can only be accessed by dev and admin<br>
 | 
			
		||||
    Returns validated as well as new measurements'
 | 
			
		||||
    x-doc: deleted samples are available only for dev/admin
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
    responses:
 | 
			
		||||
@@ -231,7 +243,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Id'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: restore sample
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: dev, admin'
 | 
			
		||||
    x-doc: status is set to 0
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
@@ -254,7 +266,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Id'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: set sample status to validated
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: dev, admin'
 | 
			
		||||
    x-doc: status is set to 10
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
@@ -277,7 +289,8 @@
 | 
			
		||||
/sample/new:
 | 
			
		||||
  post:
 | 
			
		||||
    summary: add sample
 | 
			
		||||
    description: 'Auth: basic, levels: write, maintain, dev, admin.   Number property is only for admin when adding existing samples'
 | 
			
		||||
    description: 'Auth: basic, levels: write, dev, admin.   Number property is only for admin when adding existing
 | 
			
		||||
    samples'
 | 
			
		||||
    x-doc: 'Adds status: 0 automatically'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
@@ -313,7 +326,7 @@
 | 
			
		||||
/sample/notes/fields:
 | 
			
		||||
  get:
 | 
			
		||||
    summary: list all existing field names for custom notes fields
 | 
			
		||||
    description: 'Auth: all, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: all, levels: read, write, dev, admin'
 | 
			
		||||
    x-doc: integrity has to be ensured
 | 
			
		||||
    tags:
 | 
			
		||||
      - /sample
 | 
			
		||||
 
 | 
			
		||||
@@ -3,7 +3,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Collection'
 | 
			
		||||
  get:
 | 
			
		||||
    summary: all available templates
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /template
 | 
			
		||||
    security:
 | 
			
		||||
@@ -28,7 +28,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Id'
 | 
			
		||||
  get:
 | 
			
		||||
    summary: template details
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /template
 | 
			
		||||
    security:
 | 
			
		||||
@@ -48,7 +48,7 @@
 | 
			
		||||
        $ref: 'api.yaml#/components/responses/500'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: change template
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: dev, admin'
 | 
			
		||||
    x-doc: With a change a new version is set, resulting in a new template with a new id
 | 
			
		||||
    tags:
 | 
			
		||||
      - /template
 | 
			
		||||
@@ -83,7 +83,7 @@
 | 
			
		||||
    - $ref: 'api.yaml#/components/parameters/Collection'
 | 
			
		||||
  post:
 | 
			
		||||
    summary: add template
 | 
			
		||||
    description: 'Auth: basic, levels: maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /template
 | 
			
		||||
    security:
 | 
			
		||||
 
 | 
			
		||||
@@ -24,7 +24,7 @@
 | 
			
		||||
/user:
 | 
			
		||||
  get:
 | 
			
		||||
    summary: list own user details
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /user
 | 
			
		||||
    security:
 | 
			
		||||
@@ -44,7 +44,7 @@
 | 
			
		||||
        $ref: 'api.yaml#/components/responses/500'
 | 
			
		||||
  put:
 | 
			
		||||
    summary: change user details
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /user
 | 
			
		||||
    security:
 | 
			
		||||
@@ -86,7 +86,7 @@
 | 
			
		||||
        $ref: 'api.yaml#/components/responses/500'
 | 
			
		||||
  delete:
 | 
			
		||||
    summary: delete user
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, maintain, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /user
 | 
			
		||||
    security:
 | 
			
		||||
@@ -174,7 +174,7 @@
 | 
			
		||||
/user/key:
 | 
			
		||||
  get:
 | 
			
		||||
    summary: get API key for the user
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, maintain, dev, admin'
 | 
			
		||||
    description: 'Auth: basic, levels: read, write, dev, admin'
 | 
			
		||||
    tags:
 | 
			
		||||
      - /user
 | 
			
		||||
    security:
 | 
			
		||||
 
 | 
			
		||||
@@ -47,8 +47,10 @@ let sampleDevices = {};
 | 
			
		||||
const sampleReferences = [];  // references to other samples in format {sample, referencedSample, relation}
 | 
			
		||||
let commentsLog = [];
 | 
			
		||||
let customFieldsLog = [];
 | 
			
		||||
const vzValues = {};  // vz values from comments
 | 
			
		||||
const vnValues = {};  // vn values from comments
 | 
			
		||||
const dptLog = [];
 | 
			
		||||
const dptSampleAddLog = [];  // log samples created during dpt insertion
 | 
			
		||||
const typeLog = [];
 | 
			
		||||
 | 
			
		||||
// TODO: conditions
 | 
			
		||||
 | 
			
		||||
@@ -71,10 +73,11 @@ async function main() {
 | 
			
		||||
      await importCsv(docs[i]);
 | 
			
		||||
      await allSamples();
 | 
			
		||||
      await saveSamples();
 | 
			
		||||
      await allKfVz();
 | 
			
		||||
      await allMcVn();
 | 
			
		||||
    }
 | 
			
		||||
    // write logs
 | 
			
		||||
    fs.writeFileSync('./data_import/comments.txt', commentsLog.join('\r\n'));
 | 
			
		||||
    fs.writeFileSync('./data_import/typeLog.txt', typeLog.join('\r\n'));
 | 
			
		||||
    fs.writeFileSync('./data_import/customFields.txt', customFieldsLog.join('\r\n'));
 | 
			
		||||
    fs.writeFileSync('./data_import/sampleReferences.txt', sampleReferences.map(e => JSON.stringify(e)).join('\r\n'));
 | 
			
		||||
    fs.writeFileSync('./data_import/sampleReferences.json', JSON.stringify(sampleReferences));
 | 
			
		||||
@@ -84,6 +87,7 @@ async function main() {
 | 
			
		||||
  if (stages.dpt) {  // DPT
 | 
			
		||||
    await allDpts();
 | 
			
		||||
    fs.writeFileSync('./data_import/sdptLog.txt', dptLog.join('\r\n'));
 | 
			
		||||
    fs.writeFileSync('./data_import/dptSampleAddLog.txt', dptSampleAddLog.join('\r\n'));
 | 
			
		||||
  }
 | 
			
		||||
  if (0) {  // pdf test
 | 
			
		||||
    console.log(await readPdf('N28_BN05-OX023_2019-07-16.pdf'));
 | 
			
		||||
@@ -95,24 +99,23 @@ async function main() {
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
async function importCsv(doc) {
 | 
			
		||||
  // Uniform name                 samplenumber  materialnumber  materialname  supplier material plastic reinforcingmaterial                 granulate/part color charge/batch                comments  vz(ml/g)  kfingew%       degradation(%) glassfibrecontent(%)        stabwn
 | 
			
		||||
  // Metadata__AnP2.csv           Sample number,Material number,Material name,Supplier,Material,Plastic,Reinforcing material,               granulate/Part,Color,Charge/ Batch,              Comments
 | 
			
		||||
  // Metadata__AnP2_A.csv         Sample number,Material number,Material name,Supplier,         Plastic,Reinforcing material,               Granulate/Part,                                  Comments,           Humidity [ppm]
 | 
			
		||||
  // Metadata__AnP2_B.csv         Sample number,Material number,Material name,Supplier,         Plastic,Reinforcing material,               Granulate/Part,                                            VZ [ml/g],                              glass fibre content
 | 
			
		||||
  // Metadata_Ap.csv              Sample number,Material number,Material name,Supplier,         Plastic,Reinforcing material,               Granulate/Part,Color,Charge/Batch,               Comments
 | 
			
		||||
  // Metadata_Bj.csv              Sample number,Material number,Material name,Supplier,Material,Plastic,Reinforcing material,               Granulate/Part,Color,Charge/batch granulate/part,Comments
 | 
			
		||||
  // Metadata_Eh.csv              Sample number,Material number,Material name,Supplier,Material,        Reinforcing material,               Granulate/Part,Color,Charge/Batch granulate/part,Comments, VZ [cm³/g],                                                                Spalte1
 | 
			
		||||
  // Metadata_Eh_B.csv            Sample number,                Material name,Supplier,         Plastic,Reinforcing material,               Granulate/Part,Color,                            Comments, VZ [cm³/g]
 | 
			
		||||
  // Metadata_Eh_Duroplasten.csv  Sample number,Material number,Material name,Supplier,Material,        Reinforcing material,               Granulate/Part,Color,Charge/Batch granulate/part,Comments
 | 
			
		||||
  // Metadata_Rng_aktuell.csv     Sample number,Material number,Material name,Supplier,Material,Plastic,Reinforcing material,               Granulate/Part,Color,Charge/batch granulate/part,Comments, VZ (ml/g),               Degradation(%),Glas fibre content (%)
 | 
			
		||||
  // Metadata_Rng_aktuell_A.csv   Sample number,Material number,Material name,Supplier,Material,Plastic,Reinforcing material,               Granulate/Part,Farbe,Charge/batch granulate/part,Comments,           KF in Gew%,                                               Stabwn
 | 
			
		||||
  // Metadata_Rng_aktuell_B.csv   Sample number,                Material name,Supplier,         Plastic,Reinforcing material (content in %),Granulate/Part,                                  Comments, VZ (ml/g),               Degradation (%),                                  Alterungszeit in h
 | 
			
		||||
  // Metadata_WaP.csv             Probennummer,                 Name,         Firma,   Material,                                            Teil/Rohstoff,       Charge,                     Anmerkung,VZ (ml/g),               Abbau (%),     Verstärkungsstoffgehalt (%),       Versuchsnummer
 | 
			
		||||
  // Uniform name                 samplenumber  materialnumber  materialname  supplier material plastic reinforcingmaterial  granulate/part color charge/batch                comments  vz(ml/g)  kfingew%       degradation(%) reinforcingmaterialcontent          stabwn
 | 
			
		||||
  // Metadata__AnP2.csv           Sample number,Material number,Material name,Supplier,Material,Plastic,Reinforcing material,granulate/Part,Color,Charge/ Batch,              Comments
 | 
			
		||||
  // Metadata__AnP2_A.csv         Sample number,Material number,Material name,Supplier,         Plastic,Reinforcing material,Granulate/Part,                                  Comments,           Humidity [ppm]
 | 
			
		||||
  // Metadata__AnP2_B.csv         Sample number,Material number,Material name,Supplier,         Plastic,Reinforcing material,Granulate/Part,                                            VZ [ml/g],                              glass fibre content
 | 
			
		||||
  // Metadata_Ap.csv              Sample number,Material number,Material name,Supplier,         Plastic,Reinforcing material,Granulate/Part,Color,Charge/Batch,               Comments
 | 
			
		||||
  // Metadata_Bj.csv              Sample number,Material number,Material name,Supplier,Material,Plastic,Reinforcing material,Granulate/Part,Color,Charge/batch granulate/part,Comments
 | 
			
		||||
  // Metadata_Eh.csv              Sample number,Material number,Material name,Supplier,Material,        Reinforcing material,Granulate/Part,Color,Charge/Batch granulate/part,Comments, VZ [cm³/g],                                                                        Spalte1
 | 
			
		||||
  // Metadata_Eh_B.csv            Sample number,                Material name,Supplier,         Plastic,Reinforcing material,Granulate/Part,Color,                            Comments, VZ [cm³/g]
 | 
			
		||||
  // Metadata_Eh_Duroplasten.csv  Sample number,Material number,Material name,Supplier,Material,        Reinforcing material,Granulate/Part,Color,Charge/Batch granulate/part,Comments
 | 
			
		||||
  // Metadata_Rng_aktuell.csv     Sample number,Material number,Material name,Supplier,Material,Plastic,Reinforcing material,Granulate/Part,Color,Charge/batch granulate/part,Comments, VZ (ml/g),               Degradation(%),Glas fibre content (%)
 | 
			
		||||
  // Metadata_Rng_aktuell_A.csv   Sample number,Material number,Material name,Supplier,Material,Plastic,Reinforcing material,Granulate/Part,Farbe,Charge/batch granulate/part,Comments,           KF in Gew%,                   Reinforcing material (content in %),Stabwn
 | 
			
		||||
  // Metadata_Rng_aktuell_B.csv   Sample number,                Material name,Supplier,         Plastic,                     Granulate/Part,                                  Comments, VZ (ml/g),               Degradation (%),                                          Alterungszeit in h
 | 
			
		||||
  // Metadata_WaP.csv             Probennummer,                 Name,         Firma,   Material,                             Teil/Rohstoff,       Charge,                     Anmerkung,VZ (ml/g),               Abbau (%),     Verstärkungsstoffgehalt (%),               Versuchsnummer
 | 
			
		||||
  const nameCorrection = {  // map to right column names
 | 
			
		||||
    'probennummer': 'samplenumber',
 | 
			
		||||
    'name': 'materialname',
 | 
			
		||||
    'firma': 'supplier',
 | 
			
		||||
    'reinforcingmaterial(contentin%)': 'reinforcingmaterial',
 | 
			
		||||
    'teil/rohstoff': 'granulate/part',
 | 
			
		||||
    'charge/batchgranulate/part': 'charge/batch',
 | 
			
		||||
    'charge': 'charge/batch',
 | 
			
		||||
@@ -120,7 +123,10 @@ async function importCsv(doc) {
 | 
			
		||||
    'vz[ml/g]': 'vz(ml/g)',
 | 
			
		||||
    'vz[cm³/g]': 'vz(ml/g)',
 | 
			
		||||
    'abbau(%)': 'degradation(%)',
 | 
			
		||||
    'verstärkungsstoffgehalt(%)': 'glassfibrecontent(%)'
 | 
			
		||||
    'glassfibrecontent': 'reinforcingmaterialcontent',
 | 
			
		||||
    'glasfibrecontent(%)': 'reinforcingmaterialcontent',
 | 
			
		||||
    'reinforcingmaterial(contentin%)': 'reinforcingmaterialcontent',
 | 
			
		||||
    'verstärkungsstoffgehalt(%)': 'reinforcingmaterialcontent'
 | 
			
		||||
  };
 | 
			
		||||
  const missingFieldsFill = [  // column names to fill if they do not exist
 | 
			
		||||
    'color',
 | 
			
		||||
@@ -129,7 +135,7 @@ async function importCsv(doc) {
 | 
			
		||||
    'materialnumber',
 | 
			
		||||
    'reinforcementmaterial'
 | 
			
		||||
  ]
 | 
			
		||||
  console.log('importing ' + doc);
 | 
			
		||||
  console.info('importing ' + doc);
 | 
			
		||||
  data = [];
 | 
			
		||||
  await new Promise(resolve => {
 | 
			
		||||
    fs.createReadStream(doc)
 | 
			
		||||
@@ -158,9 +164,9 @@ async function importCsv(doc) {
 | 
			
		||||
              newE[field] = '';
 | 
			
		||||
            }
 | 
			
		||||
          });
 | 
			
		||||
          // if(newE['materialname'] === '') {  // TODO: is this replacement okay?
 | 
			
		||||
          //   newE['materialname'] = newE['material'];
 | 
			
		||||
          // }
 | 
			
		||||
          if(newE['materialname'] === '') {
 | 
			
		||||
            newE['materialname'] = newE['material'];
 | 
			
		||||
          }
 | 
			
		||||
          if (newE['supplier'] === '') {  // empty supplier fields
 | 
			
		||||
            newE['supplier'] = 'unknown';
 | 
			
		||||
          }
 | 
			
		||||
@@ -211,12 +217,69 @@ async function allDpts() {
 | 
			
		||||
  res.data.forEach(sample => {
 | 
			
		||||
    sampleIds[sample.number] = sample._id;
 | 
			
		||||
  });
 | 
			
		||||
  const dptRegex = /(.*?)_(.*?)_(\d+|[a-zA-Z0-9]+_\d+).DPT/;
 | 
			
		||||
  const dptRegex = /(.*?)_(.*?)_(\d+|[a-zA-Z0-9]+[_.]\d+)(_JDX)?[.]{1,2}(DPT|csv|CSV|JDX)/;
 | 
			
		||||
  const dpts = fs.readdirSync(dptFiles);
 | 
			
		||||
  for (let i in dpts) {
 | 
			
		||||
    const regexRes = dptRegex.exec(dpts[i])
 | 
			
		||||
    let regexInput;
 | 
			
		||||
    const bjRes = /^(Bj[FT]?)\s?([a-z0-9_]*)_JDX.DPT/.exec(dpts[i]);
 | 
			
		||||
    if (bjRes) {  // correct Bj numbers with space
 | 
			
		||||
      regexInput = `Bj01_${bjRes[1]}${bjRes[2]}_0.DPT`;
 | 
			
		||||
    }
 | 
			
		||||
    else {  // remove _JDX from name
 | 
			
		||||
      regexInput = dpts[i].replace(/_JDX.*\./, '.');
 | 
			
		||||
    }
 | 
			
		||||
    const regexRes = dptRegex.exec(regexInput);
 | 
			
		||||
    if (regexRes && !sampleIds[regexRes[2]]) {  // when sample number includes an additional _x instead of having _x_x for spectrum description
 | 
			
		||||
      regexRes[2] = `${regexRes[2]}_${regexRes[3].split('_')[0]}`;
 | 
			
		||||
    }
 | 
			
		||||
    let baseSample = null;
 | 
			
		||||
    if (regexRes) {
 | 
			
		||||
      baseSample = regexRes[2].split('_')[0];
 | 
			
		||||
      if (baseSample === 'Wa11') {  // as Wa11 samples use all the same material
 | 
			
		||||
        baseSample = 'Wa11_B0_1';
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
    if (regexRes && !sampleIds[regexRes[2]] && sampleIds[baseSample]) {  // when number_abx does not exist but number
 | 
			
		||||
      dptSampleAddLog.push(`Trying to find ${baseSample}`);
 | 
			
		||||
      dptSampleAddLog.push(host + '/sample/' + sampleIds[baseSample]);
 | 
			
		||||
      res = await axios({  // get base sample
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: host + '/sample/' + stripSpaces(sampleIds[baseSample]),
 | 
			
		||||
        auth: {
 | 
			
		||||
          username: 'admin',
 | 
			
		||||
          password: 'Abc123!#'
 | 
			
		||||
        }
 | 
			
		||||
      }).catch(err => {
 | 
			
		||||
        if (err.response) {
 | 
			
		||||
          console.error(err.response.data);
 | 
			
		||||
          errors.push(`DPT Could not fetch sample ${baseSample}: ${JSON.stringify(err.response.data)}`);
 | 
			
		||||
        }
 | 
			
		||||
      });
 | 
			
		||||
      if (res) {
 | 
			
		||||
        const data = _.merge(_.pick(res.data, ['color', 'type', 'batch']),
 | 
			
		||||
          {number: regexRes[2], condition: {}, notes: {}, material_id: res.data.material._id});
 | 
			
		||||
        res = await axios({
 | 
			
		||||
          method: 'post',
 | 
			
		||||
          url: host + '/sample/new',
 | 
			
		||||
          auth: {
 | 
			
		||||
            username: res.data.user,
 | 
			
		||||
            password: res.data.user === 'admin' ? 'Abc123!#' : '2020DeFinMachen!'
 | 
			
		||||
          },
 | 
			
		||||
          data
 | 
			
		||||
        }).catch(err => {
 | 
			
		||||
          if (err.response) {
 | 
			
		||||
            console.error(err.response.data);
 | 
			
		||||
            errors.push(`DPT Could not save sample ${data}: ${err.response.data}`);
 | 
			
		||||
          }
 | 
			
		||||
        });
 | 
			
		||||
        if (res.data) {
 | 
			
		||||
          dptSampleAddLog.push(`${regexRes[2]} from ${baseSample}`)
 | 
			
		||||
          sampleIds[regexRes[2]] = res.data._id;
 | 
			
		||||
        }
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
    if (regexRes && sampleIds[regexRes[2]]) {  // found matching sample
 | 
			
		||||
      console.log(`${dpts[i]} -> ${regexRes[2]}`);
 | 
			
		||||
      console.log(`${i}/${dpts.length}  ${dpts[i]} -> ${regexRes[2]}`);
 | 
			
		||||
      dptLog.push(`${dpts[i]}, ${regexRes[2]}`);
 | 
			
		||||
      const f = fs.readFileSync(dptFiles + '\\' + dpts[i], 'utf-8');
 | 
			
		||||
      const data = {
 | 
			
		||||
@@ -225,10 +288,11 @@ async function allDpts() {
 | 
			
		||||
        measurement_template
 | 
			
		||||
      };
 | 
			
		||||
      data.values.device = regexRes[1];
 | 
			
		||||
      data.values.dpt = f.split('\r\n').map(e => e.split(','));
 | 
			
		||||
      data.values.filename = dpts[i];
 | 
			
		||||
      data.values.dpt = f.split('\r\n').map(e => e.split(',').map(e => parseFloat(e)));
 | 
			
		||||
      let rescale = false;
 | 
			
		||||
      for (let i in data.values.dpt) {
 | 
			
		||||
        if (data.values.dpt[i][1] > 2) {
 | 
			
		||||
        if (data.values.dpt[i][1] > 10) {
 | 
			
		||||
          rescale = true;
 | 
			
		||||
          break;
 | 
			
		||||
        }
 | 
			
		||||
@@ -258,12 +322,17 @@ async function allDpts() {
 | 
			
		||||
    }
 | 
			
		||||
    else {
 | 
			
		||||
      console.log(`Could not find sample for ${dpts[i]}`);
 | 
			
		||||
      errors.push(`Could not find sample for ${dpts[i]}`);
 | 
			
		||||
      if (regexRes) {
 | 
			
		||||
        errors.push(`Could not find sample for ${dpts[i]}; [DEBUG] ${regexRes[2]}, ${!sampleIds[regexRes[2]]}, ${sampleIds[baseSample]}`);
 | 
			
		||||
      }
 | 
			
		||||
      else {
 | 
			
		||||
        errors.push(`Could not find sample for ${dpts[i]} (did not match RegEx)`);
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
async function allKfVz() {
 | 
			
		||||
async function allMcVn() {
 | 
			
		||||
  let res = await axios({
 | 
			
		||||
    method: 'get',
 | 
			
		||||
    url: host + '/template/measurements',
 | 
			
		||||
@@ -272,8 +341,9 @@ async function allKfVz() {
 | 
			
		||||
      password: 'Abc123!#'
 | 
			
		||||
    }
 | 
			
		||||
  });
 | 
			
		||||
  const kf_template = res.data.filter(e => e.name === 'kf').sort((a, b) => b.version - a.version)[0]._id;
 | 
			
		||||
  const vz_template = res.data.filter(e => e.name === 'vz').sort((a, b) => b.version - a.version)[0]._id;
 | 
			
		||||
  const mc_template = res.data.filter(e => e.name === 'moisture content').sort((a, b) => b.version - a.version)[0]._id;
 | 
			
		||||
  const vn_template = res.data.filter(e => e.name === 'vn').sort((a, b) => b.version - a.version)[0]._id;
 | 
			
		||||
  const rmc_template = res.data.filter(e => e.name === 'reinforcement material content').sort((a, b) => b.version - a.version)[0]._id;
 | 
			
		||||
  res = await axios({
 | 
			
		||||
    method: 'get',
 | 
			
		||||
    url: host + '/samples?status=all',
 | 
			
		||||
@@ -287,14 +357,15 @@ async function allKfVz() {
 | 
			
		||||
    sampleIds[sample.number] = sample._id;
 | 
			
		||||
  });
 | 
			
		||||
  for (let index in data) {
 | 
			
		||||
    console.info(`KF/VZ ${index}/${data.length}`);
 | 
			
		||||
    console.info(`MC/VN ${index}/${data.length}`);
 | 
			
		||||
    let sample = data[index];
 | 
			
		||||
    sample['samplenumber'] = sample['samplenumber'].replace(/[A-Z][a-z]0\d_/, '');
 | 
			
		||||
    let credentials = ['admin', 'Abc123!#'];
 | 
			
		||||
    if (sampleDevices[sample['samplenumber']]) {
 | 
			
		||||
      credentials = [sampleDevices[sample['samplenumber']], '2020DeFinMachen!']
 | 
			
		||||
    }
 | 
			
		||||
    if (!sample['vz(ml/g)'] && vzValues[sample['samplenumber']]) {  // fill in VZ values from comments
 | 
			
		||||
      sample['vz(ml/g)'] = vzValues[sample['samplenumber']];
 | 
			
		||||
    if (!sample['vz(ml/g)'] && vnValues[sample['samplenumber']]) {  // fill in VN values from comments
 | 
			
		||||
      sample['vz(ml/g)'] = vnValues[sample['samplenumber']];
 | 
			
		||||
    }
 | 
			
		||||
    if (sample['kfingew%']) {
 | 
			
		||||
      await axios({
 | 
			
		||||
@@ -306,7 +377,7 @@ async function allKfVz() {
 | 
			
		||||
        },
 | 
			
		||||
        data: {
 | 
			
		||||
          sample_id: sampleIds[sample['samplenumber']],
 | 
			
		||||
          measurement_template: kf_template,
 | 
			
		||||
          measurement_template: mc_template,
 | 
			
		||||
          values: {
 | 
			
		||||
            'weight %': sample['kfingew%'],
 | 
			
		||||
            'standard deviation': sample['stabwn']
 | 
			
		||||
@@ -315,7 +386,7 @@ async function allKfVz() {
 | 
			
		||||
      }).catch(err => {
 | 
			
		||||
        console.log(sample['samplenumber']);
 | 
			
		||||
        console.error(err.response.data);
 | 
			
		||||
        errors.push(`KF/VZ upload for ${JSON.stringify(sample)} failed: ${JSON.stringify(err.response.data)}`);
 | 
			
		||||
        errors.push(`MC/VN upload for ${JSON.stringify(sample)} failed: ${JSON.stringify(err.response.data)}`);
 | 
			
		||||
      });
 | 
			
		||||
    }
 | 
			
		||||
    if (sample['vz(ml/g)']) {
 | 
			
		||||
@@ -328,15 +399,36 @@ async function allKfVz() {
 | 
			
		||||
        },
 | 
			
		||||
        data: {
 | 
			
		||||
          sample_id: sampleIds[sample['samplenumber']],
 | 
			
		||||
          measurement_template: vz_template,
 | 
			
		||||
          measurement_template: vn_template,
 | 
			
		||||
          values: {
 | 
			
		||||
            vz: sample['vz(ml/g)']
 | 
			
		||||
            vn: sample['vz(ml/g)']
 | 
			
		||||
          }
 | 
			
		||||
        }
 | 
			
		||||
      }).catch(err => {
 | 
			
		||||
        console.log(sample['samplenumber']);
 | 
			
		||||
        console.error(err.response.data);
 | 
			
		||||
        errors.push(`KF/VZ upload for ${JSON.stringify(sample)} failed: ${JSON.stringify(err.response.data)}`);
 | 
			
		||||
        errors.push(`MC/VN upload for ${JSON.stringify(sample)} failed: ${JSON.stringify(err.response.data)}`);
 | 
			
		||||
      });
 | 
			
		||||
    }
 | 
			
		||||
    if (sample['reinforcingmaterialcontent']) {
 | 
			
		||||
      await axios({
 | 
			
		||||
        method: 'post',
 | 
			
		||||
        url: host + '/measurement/new',
 | 
			
		||||
        auth: {
 | 
			
		||||
          username: credentials[0],
 | 
			
		||||
          password: credentials[1]
 | 
			
		||||
        },
 | 
			
		||||
        data: {
 | 
			
		||||
          sample_id: sampleIds[sample['samplenumber']],
 | 
			
		||||
          measurement_template: rmc_template,
 | 
			
		||||
          values: {
 | 
			
		||||
            percentage: Number(sample['reinforcingmaterialcontent'].replace('%', '').replace(',', '.'))
 | 
			
		||||
          }
 | 
			
		||||
        }
 | 
			
		||||
      }).catch(err => {
 | 
			
		||||
        console.log(sample['samplenumber']);
 | 
			
		||||
        console.error(err.response.data);
 | 
			
		||||
        errors.push(`MC/VN upload for ${JSON.stringify(sample)} failed: ${JSON.stringify(err.response.data)}`);
 | 
			
		||||
      });
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
@@ -422,7 +514,7 @@ async function allSamples() {
 | 
			
		||||
        samples[si].color = number.color;
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
    else if (sampleColors[sample['samplenumber'].split('_')[0]]) {  // derive color from main sample for kf/vz
 | 
			
		||||
    else if (sampleColors[sample['samplenumber'].split('_')[0]]) {  // derive color from main sample for mc/vn
 | 
			
		||||
      samples[si].color = sampleColors[sample['samplenumber'].split('_')[0]];
 | 
			
		||||
    }
 | 
			
		||||
    if (!samples[si].color) {
 | 
			
		||||
@@ -436,7 +528,6 @@ async function saveSamples() {
 | 
			
		||||
    console.info(`SAMPLE SAVE ${i}/${samples.length}`);
 | 
			
		||||
    let credentials = ['admin', 'Abc123!#'];
 | 
			
		||||
    if (sampleDevices[samples[i].number]) {
 | 
			
		||||
      console.log(sampleDevices[samples[i].number]);
 | 
			
		||||
      credentials = [sampleDevices[samples[i].number], '2020DeFinMachen!']
 | 
			
		||||
    }
 | 
			
		||||
    await axios({
 | 
			
		||||
@@ -520,7 +611,7 @@ async function allMaterials() {
 | 
			
		||||
      password: 'Abc123!#'
 | 
			
		||||
    }
 | 
			
		||||
  });
 | 
			
		||||
  const materialTemplate = res.data.find(e => e.name === 'plastic')._id;
 | 
			
		||||
  const materialTemplate = res.data.filter(e => e.name === 'plastic').sort((a, b) => b.version - a.version)[0]._id;
 | 
			
		||||
 | 
			
		||||
  // process all samples
 | 
			
		||||
  for (let index in data) {
 | 
			
		||||
@@ -718,7 +809,7 @@ function readPdf(file) {
 | 
			
		||||
    let lastLastText = '';  // text of last last item
 | 
			
		||||
    await new pdfReader.PdfReader().parseFileItems(nmDocs + '\\' + file, (err, item) => {
 | 
			
		||||
      if (item && item.text) {
 | 
			
		||||
        if ((stripSpaces(lastLastText + lastText + item.text).toLowerCase().indexOf('colordesignationsuppl') >= 0) || (stripSpaces(lastLastText + lastText + item.text).toLowerCase().indexOf('colordesignatiomsupplier') >= 0)) {  // table area starts
 | 
			
		||||
        if ((stripSpaces(lastLastText + lastText + item.text).toLowerCase().indexOf('colordesignationsuppl') >= 0) || (stripSpaces(lastLastText + lastText + item.text).toLowerCase().indexOf('colordesignatiomsuppl') >= 0)) {  // table area starts
 | 
			
		||||
          table = countdown;
 | 
			
		||||
        }
 | 
			
		||||
        if (table > 0) {
 | 
			
		||||
@@ -822,9 +913,9 @@ function customFields (comment, sampleNumber) {
 | 
			
		||||
    {docKey: 'zu', dbKey: 'belongs to', regex: /zu (\S*\d+)/, category: 'reference'},
 | 
			
		||||
    {docKey: 'granulate zu', dbKey: 'granulate to', regex: /granulate zu.* (\S*\d+)/, category: 'reference'},
 | 
			
		||||
    {docKey: 'construction part', dbKey: 'construction part', regex: /(?<!granulate)construction part.* (\S*\d+)/, category: 'reference'},
 | 
			
		||||
    {docKey: 'VZ =', dbKey: 'vz', regex: /VZ = (\d+) cm³\/g/, category: 'vz'},
 | 
			
		||||
    {docKey: 'VZ =', dbKey: 'vn', regex: /VZ = (\d+) cm³\/g/, category: 'vn'},
 | 
			
		||||
    {docKey: 'VWZ', dbKey: 'vwz', regex: /(\d+ min) VWZ \//, category: 'customField'},
 | 
			
		||||
    {docKey: 'VZ:', dbKey: 'vz', regex: /VZ: ([0-9.,]+) mL\/g[;]?/, category: 'vz'}
 | 
			
		||||
    {docKey: 'VZ:', dbKey: 'vn', regex: /VZ: ([0-9.,]+) mL\/g[;]?/, category: 'vn'}
 | 
			
		||||
  ];
 | 
			
		||||
  const res = {};  // returned result
 | 
			
		||||
  const usedParts = [];  // all substrings used for custom fields, subtract at the end, as some parts are used multiple times
 | 
			
		||||
@@ -837,8 +928,8 @@ function customFields (comment, sampleNumber) {
 | 
			
		||||
          if (cField.category === 'reference') {
 | 
			
		||||
            sampleReferences.push({sample: sampleNumber, referencedSample: regexRes[1], relation: cField.dbKey});
 | 
			
		||||
          }
 | 
			
		||||
          else if (cField.category === 'vz') {
 | 
			
		||||
            vzValues[sampleNumber] = regexRes[1];
 | 
			
		||||
          else if (cField.category === 'vn') {
 | 
			
		||||
            vnValues[sampleNumber] = regexRes[1];
 | 
			
		||||
          }
 | 
			
		||||
          else {
 | 
			
		||||
            res[cField.dbKey] = regexRes.filter((e, i) => i > 0).join(' ');
 | 
			
		||||
@@ -864,8 +955,12 @@ function customFields (comment, sampleNumber) {
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
function sampleType (type) {
 | 
			
		||||
  const allowedTypes = ['tension rod', 'part', 'granulate'];
 | 
			
		||||
  return allowedTypes.indexOf(type) >= 0 ? type : (type === '' ? 'unknown' : 'other');
 | 
			
		||||
  type = stripSpaces(type).toLowerCase();
 | 
			
		||||
  const allowedTypes = {'tension rod': 'tension rod', 'Zugstab': 'tension rod', 'part': 'part', 'granulate': 'granulate'};
 | 
			
		||||
  if (!allowedTypes[type]) {
 | 
			
		||||
    typeLog.push(type);
 | 
			
		||||
  }
 | 
			
		||||
  return allowedTypes[type] ? allowedTypes[type] : 'part';
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
function stripSpaces(s) {
 | 
			
		||||
 
 | 
			
		||||
							
								
								
									
										5
									
								
								package-lock.json
									
									
									
										generated
									
									
									
								
							
							
						
						
									
										5
									
								
								package-lock.json
									
									
									
										generated
									
									
									
								
							@@ -2522,11 +2522,6 @@
 | 
			
		||||
        }
 | 
			
		||||
      }
 | 
			
		||||
    },
 | 
			
		||||
    "mongo-sanitize": {
 | 
			
		||||
      "version": "1.1.0",
 | 
			
		||||
      "resolved": "https://registry.npmjs.org/mongo-sanitize/-/mongo-sanitize-1.1.0.tgz",
 | 
			
		||||
      "integrity": "sha512-6gB9AiJD+om2eZLxaPKIP5Q8P3Fr+s+17rVWso7hU0+MAzmIvIMlgTYuyvalDLTtE/p0gczcvJ8A3pbN1XmQ/A=="
 | 
			
		||||
    },
 | 
			
		||||
    "mongodb": {
 | 
			
		||||
      "version": "3.4.1",
 | 
			
		||||
      "resolved": "https://registry.npmjs.org/mongodb/-/mongodb-3.4.1.tgz",
 | 
			
		||||
 
 | 
			
		||||
@@ -11,6 +11,7 @@
 | 
			
		||||
    "test": "mocha dist/**/**.spec.js",
 | 
			
		||||
    "start": "node index.js",
 | 
			
		||||
    "dev": "nodemon -e ts,yaml --exec \"tsc && node dist/index.js || exit 1\"",
 | 
			
		||||
    "start-local": "node dist/index.js",
 | 
			
		||||
    "loadDev": "node dist/test/loadDev.js",
 | 
			
		||||
    "coverage": "tsc && nyc --reporter=html --reporter=text mocha dist/**/**.spec.js --timeout 5000",
 | 
			
		||||
    "import": "node data_import/import.js"
 | 
			
		||||
@@ -35,7 +36,6 @@
 | 
			
		||||
    "json-schema": "^0.2.5",
 | 
			
		||||
    "json2csv": "^5.0.1",
 | 
			
		||||
    "lodash": "^4.17.15",
 | 
			
		||||
    "mongo-sanitize": "^1.1.0",
 | 
			
		||||
    "mongoose": "^5.8.7",
 | 
			
		||||
    "swagger-ui-dist": "^3.30.2"
 | 
			
		||||
  },
 | 
			
		||||
 
 | 
			
		||||
@@ -7,7 +7,7 @@ import ChangelogModel from './models/changelog';
 | 
			
		||||
// database urls, prod db url is retrieved automatically
 | 
			
		||||
const TESTING_URL = 'mongodb://localhost/dfopdb_test';
 | 
			
		||||
const DEV_URL = 'mongodb://localhost/dfopdb';
 | 
			
		||||
const debugging = true;
 | 
			
		||||
const debugging = false;
 | 
			
		||||
 | 
			
		||||
if (process.env.NODE_ENV !== 'production' && debugging) {
 | 
			
		||||
  mongoose.set('debug', true);  // enable mongoose debug
 | 
			
		||||
@@ -114,6 +114,9 @@ export default class db {
 | 
			
		||||
    Object.keys(json.collections).forEach(collectionName => {  // create each collection
 | 
			
		||||
      json.collections[collectionName] = this.oidResolve(json.collections[collectionName]);
 | 
			
		||||
      this.state.db.createCollection(collectionName, (err, collection) => {
 | 
			
		||||
        if (err) {
 | 
			
		||||
          console.error(err);
 | 
			
		||||
        }
 | 
			
		||||
        collection.insertMany(json.collections[collectionName], () => {  // insert JSON data
 | 
			
		||||
          if (++ loadCounter >= Object.keys(json.collections).length) {  // all collections loaded
 | 
			
		||||
            done();
 | 
			
		||||
 
 | 
			
		||||
@@ -1,8 +1,7 @@
 | 
			
		||||
const globals = {
 | 
			
		||||
  levels: [  // access levels
 | 
			
		||||
  levels: [  // access levels, sorted asc by rights
 | 
			
		||||
    'read',
 | 
			
		||||
    'write',
 | 
			
		||||
    'maintain',
 | 
			
		||||
    'dev',
 | 
			
		||||
    'admin'
 | 
			
		||||
  ],
 | 
			
		||||
 
 | 
			
		||||
@@ -2,44 +2,65 @@ import axios from 'axios';
 | 
			
		||||
 | 
			
		||||
// sends an email using the BIC service
 | 
			
		||||
 | 
			
		||||
export default (mailAddress, subject, content, f) => {  // callback, executed empty or with error
 | 
			
		||||
  if (process.env.NODE_ENV === 'production') {
 | 
			
		||||
    const mailService = JSON.parse(process.env.VCAP_SERVICES).Mail[0];
 | 
			
		||||
    axios({
 | 
			
		||||
      method: 'post',
 | 
			
		||||
      url: mailService.credentials.uri + '/email',
 | 
			
		||||
      auth: {username: mailService.credentials.username, password: mailService.credentials.password},
 | 
			
		||||
      data: {
 | 
			
		||||
        recipients: [{to: mailAddress}],
 | 
			
		||||
        subject: {content: subject},
 | 
			
		||||
        body: {
 | 
			
		||||
          content: content,
 | 
			
		||||
          contentType: "text/html"
 | 
			
		||||
        },
 | 
			
		||||
        from: {
 | 
			
		||||
          eMail: "definma@bosch-iot.com",
 | 
			
		||||
          password: "PlasticsOfFingerprintDigital"
 | 
			
		||||
        }
 | 
			
		||||
      }
 | 
			
		||||
    })
 | 
			
		||||
      .then(() => {
 | 
			
		||||
        f();
 | 
			
		||||
      })
 | 
			
		||||
      .catch((err) => {
 | 
			
		||||
        f(err);
 | 
			
		||||
      });
 | 
			
		||||
  }
 | 
			
		||||
  else if (process.env.NODE_ENV === 'test') {
 | 
			
		||||
    console.info('Sending mail to ' + mailAddress + ':  -- ' + subject + ' -- ' + content);
 | 
			
		||||
    f();
 | 
			
		||||
  }
 | 
			
		||||
  else {  // dev
 | 
			
		||||
    axios({
 | 
			
		||||
export default class Mail{
 | 
			
		||||
 | 
			
		||||
  static readonly address = 'definma@bosch-iot.com';
 | 
			
		||||
  static uri: string;
 | 
			
		||||
  static auth = {username: '', password: ''};
 | 
			
		||||
  static mailPass: string;
 | 
			
		||||
 | 
			
		||||
  static init() {
 | 
			
		||||
    this.mailPass = Array(64).map(() => Math.floor(Math.random() * 10)).join('');
 | 
			
		||||
    this.uri = JSON.parse(process.env.VCAP_SERVICES).Mail[0].credentials.uri;
 | 
			
		||||
    this.auth.username = JSON.parse(process.env.VCAP_SERVICES).Mail[0].credentials.username;
 | 
			
		||||
    this.auth.password = JSON.parse(process.env.VCAP_SERVICES).Mail[0].credentials.password;
 | 
			
		||||
    axios({  // get registered mail addresses
 | 
			
		||||
      method: 'get',
 | 
			
		||||
      url: 'https://digital-fingerprint-of-plastics-mail-test.apps.de1.bosch-iot-cloud.com/api',
 | 
			
		||||
      data: {
 | 
			
		||||
      url: this.uri + '/management/userDomainMapping',
 | 
			
		||||
      auth: this.auth
 | 
			
		||||
    }).then(res => {
 | 
			
		||||
      return new Promise(async (resolve, reject) => {
 | 
			
		||||
        try {
 | 
			
		||||
          if (res.data.addresses.indexOf(this.address) < 0) {  // mail address not registered
 | 
			
		||||
            if (res.data.addresses.length) {  // delete wrong registered mail address
 | 
			
		||||
              await axios({
 | 
			
		||||
                method: 'delete',
 | 
			
		||||
                url: this.uri + '/management/mailAddresses/' + res.data.addresses[0],
 | 
			
		||||
                auth: this.auth
 | 
			
		||||
              });
 | 
			
		||||
            }
 | 
			
		||||
            await axios({  // register right mail address
 | 
			
		||||
              method: 'post',
 | 
			
		||||
              url: this.uri + '/management/mailAddresses/' + this.address,
 | 
			
		||||
              auth: this.auth
 | 
			
		||||
            });
 | 
			
		||||
          }
 | 
			
		||||
          resolve();
 | 
			
		||||
        }
 | 
			
		||||
        catch (e) {
 | 
			
		||||
          reject(e);
 | 
			
		||||
        }
 | 
			
		||||
      });
 | 
			
		||||
    }).then(() => {
 | 
			
		||||
      return axios({  // set new mail password
 | 
			
		||||
        method: 'put',
 | 
			
		||||
        url: this.uri + '/management/mailAddresses/' + this.address + '/password/' + this.mailPass,
 | 
			
		||||
        auth: this.auth
 | 
			
		||||
      });
 | 
			
		||||
    }).then(() => {  // init done successfully
 | 
			
		||||
      this.send('lukas.veit@bosch.com', 'Mail Service started', new Date().toString());
 | 
			
		||||
    }).catch(err => {  // anywhere an error occurred
 | 
			
		||||
      console.error(`Mail init error: ${err.request.method} ${err.request.path}: ${err.response.status}`,
 | 
			
		||||
        err.response.data);
 | 
			
		||||
    });
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static send (mailAddress, subject, content, f = () => {}) {  // callback, executed empty or with error
 | 
			
		||||
    if (process.env.NODE_ENV === 'production') {  // only send mails in production
 | 
			
		||||
      axios({
 | 
			
		||||
        method: 'post',
 | 
			
		||||
        url: '/email',
 | 
			
		||||
        url: this.uri + '/email',
 | 
			
		||||
        auth: this.auth,
 | 
			
		||||
        data: {
 | 
			
		||||
          recipients: [{to: mailAddress}],
 | 
			
		||||
          subject: {content: subject},
 | 
			
		||||
@@ -48,17 +69,19 @@ export default (mailAddress, subject, content, f) => {  // callback, executed em
 | 
			
		||||
            contentType: "text/html"
 | 
			
		||||
          },
 | 
			
		||||
          from: {
 | 
			
		||||
            eMail: "dfop-test@bosch-iot.com",
 | 
			
		||||
            password: "PlasticsOfFingerprintDigital"
 | 
			
		||||
            eMail: this.address,
 | 
			
		||||
            password: this.mailPass
 | 
			
		||||
          }
 | 
			
		||||
        }
 | 
			
		||||
      }
 | 
			
		||||
    })
 | 
			
		||||
      .then(() => {
 | 
			
		||||
      }).then(() => {
 | 
			
		||||
        f();
 | 
			
		||||
      })
 | 
			
		||||
      .catch((err) => {
 | 
			
		||||
      }).catch((err) => {
 | 
			
		||||
        f(err);
 | 
			
		||||
      });
 | 
			
		||||
    }
 | 
			
		||||
    else {  // dev dummy replacement
 | 
			
		||||
      console.info('Sending mail to ' + mailAddress + ':  -- ' + subject + ' -- ' + content);
 | 
			
		||||
      f();
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
}
 | 
			
		||||
}
 | 
			
		||||
 
 | 
			
		||||
							
								
								
									
										16
									
								
								src/index.ts
									
									
									
									
									
								
							
							
						
						
									
										16
									
								
								src/index.ts
									
									
									
									
									
								
							@@ -2,7 +2,6 @@ import express from 'express';
 | 
			
		||||
import bodyParser from 'body-parser';
 | 
			
		||||
import compression from 'compression';
 | 
			
		||||
import contentFilter from 'content-filter';
 | 
			
		||||
import mongoSanitize from 'mongo-sanitize';
 | 
			
		||||
import helmet from 'helmet';
 | 
			
		||||
import cors from 'cors';
 | 
			
		||||
import api from './api';
 | 
			
		||||
@@ -11,7 +10,8 @@ import db from './db';
 | 
			
		||||
// TODO: check header, also in UI
 | 
			
		||||
 | 
			
		||||
// tell if server is running in debug or production environment
 | 
			
		||||
console.info(process.env.NODE_ENV === 'production' ? '===== PRODUCTION =====' : process.env.NODE_ENV === 'test' ? '' :'===== DEVELOPMENT =====');
 | 
			
		||||
console.info(process.env.NODE_ENV === 'production' ?
 | 
			
		||||
  '===== PRODUCTION =====' : process.env.NODE_ENV === 'test' ? '' :'===== DEVELOPMENT =====');
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
// mongodb connection
 | 
			
		||||
@@ -61,15 +61,15 @@ app.use('/static/img/bosch-logo.svg', helmet.contentSecurityPolicy({
 | 
			
		||||
}));
 | 
			
		||||
 | 
			
		||||
// middleware
 | 
			
		||||
app.use(contentFilter());  // filter URL query attacks
 | 
			
		||||
app.use(compression());  // compress responses
 | 
			
		||||
app.use(express.json({ limit: '5mb'}));
 | 
			
		||||
app.use(express.urlencoded({ extended: false, limit: '5mb' }));
 | 
			
		||||
app.use(compression());  // compress responses
 | 
			
		||||
app.use(bodyParser.json());
 | 
			
		||||
app.use((req, res, next) => {  // filter body query attacks
 | 
			
		||||
  req.body = mongoSanitize(req.body);
 | 
			
		||||
  next();
 | 
			
		||||
});
 | 
			
		||||
const injectionBlackList = ['$', '{', '&&', '||'];
 | 
			
		||||
app.use(contentFilter({
 | 
			
		||||
  urlBlackList: injectionBlackList,
 | 
			
		||||
  bodyBlackList: injectionBlackList
 | 
			
		||||
}));  // filter URL query attacks
 | 
			
		||||
app.use((err, req, res, ignore) => {  // bodyParser error handling
 | 
			
		||||
  res.status(400).send({status: 'Invalid JSON body'});
 | 
			
		||||
});
 | 
			
		||||
 
 | 
			
		||||
@@ -208,7 +208,7 @@ describe('/material', () => {
 | 
			
		||||
        res: {_id: '100000000000000000000007', name: 'Ultramid A4H', supplier: 'BASF', group: 'PA66', properties: {material_template: '130000000000000000000003', mineral: 0, glass_fiber: 0, carbon_fiber: 0}, numbers: []}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('returns a deleted material for a maintain/admin user', done => {
 | 
			
		||||
    it('returns a deleted material for a dev/admin user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/material/100000000000000000000008',
 | 
			
		||||
 
 | 
			
		||||
@@ -19,7 +19,7 @@ import ParametersValidate from './validate/parameters';
 | 
			
		||||
const router = express.Router();
 | 
			
		||||
 | 
			
		||||
router.get('/materials', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  const {error, value: filters} = MaterialValidate.query(req.query);
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
@@ -41,22 +41,25 @@ router.get('/materials', (req, res, next) => {
 | 
			
		||||
  MaterialModel.find(conditions).populate('group_id').populate('supplier_id').lean().exec((err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
 | 
			
		||||
    res.json(_.compact(data.map(e => MaterialValidate.output(e))));  // validate all and filter null values from validation errors
 | 
			
		||||
    // validate all and filter null values from validation errors
 | 
			
		||||
    res.json(_.compact(data.map(e => MaterialValidate.output(e))));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/materials/:state(new|deleted)', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  MaterialModel.find({status: globals.status[req.params.state]}).populate('group_id').populate('supplier_id').lean().exec((err, data) => {
 | 
			
		||||
  MaterialModel.find({status: globals.status[req.params.state]}).populate('group_id').populate('supplier_id')
 | 
			
		||||
    .lean().exec((err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
 | 
			
		||||
    res.json(_.compact(data.map(e => MaterialValidate.output(e))));  // validate all and filter null values from validation errors
 | 
			
		||||
    // validate all and filter null values from validation errors
 | 
			
		||||
    res.json(_.compact(data.map(e => MaterialValidate.output(e))));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/material/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  MaterialModel.findById(req.params.id).populate('group_id').populate('supplier_id').lean().exec((err, data: any) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
@@ -65,13 +68,14 @@ router.get('/material/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
      return res.status(404).json({status: 'Not found'});
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    if (data.status === globals.status.deleted && !req.auth(res, ['maintain', 'admin'], 'all')) return;  // deleted materials only available for maintain/admin
 | 
			
		||||
    // deleted materials only available for dev/admin
 | 
			
		||||
    if (data.status === globals.status.deleted && !req.auth(res, ['dev', 'admin'], 'all')) return;
 | 
			
		||||
    res.json(MaterialValidate.output(data));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/material/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  let {error, value: material} = MaterialValidate.input(req.body, 'change');
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
@@ -95,7 +99,8 @@ router.put('/material/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
      if (!material) return;
 | 
			
		||||
    }
 | 
			
		||||
    if (material.hasOwnProperty('properties')) {
 | 
			
		||||
      if (!await propertiesCheck(material.properties, 'change', res, next, materialData.properties.material_template.toString() !== material.properties.material_template)) return;
 | 
			
		||||
      if (!await propertiesCheck(material.properties, 'change', res, next,
 | 
			
		||||
        materialData.properties.material_template.toString() !== material.properties.material_template)) return;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    // check for changes
 | 
			
		||||
@@ -103,7 +108,8 @@ router.put('/material/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
      material.status = globals.status.new;  // set status to new
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    await MaterialModel.findByIdAndUpdate(req.params.id, material, {new: true}).log(req).populate('group_id').populate('supplier_id').lean().exec((err, data) => {
 | 
			
		||||
    await MaterialModel.findByIdAndUpdate(req.params.id, material, {new: true})
 | 
			
		||||
      .log(req).populate('group_id').populate('supplier_id').lean().exec((err, data) => {
 | 
			
		||||
      if (err) return next(err);
 | 
			
		||||
      res.json(MaterialValidate.output(data));
 | 
			
		||||
    });
 | 
			
		||||
@@ -111,7 +117,7 @@ router.put('/material/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.delete('/material/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  // check if there are still samples referencing this material
 | 
			
		||||
  SampleModel.find({'material_id': new mongoose.Types.ObjectId(req.params.id)}).lean().exec((err, data) => {
 | 
			
		||||
@@ -119,7 +125,8 @@ router.delete('/material/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
    if (data.length) {
 | 
			
		||||
      return res.status(400).json({status: 'Material still in use'});
 | 
			
		||||
    }
 | 
			
		||||
    MaterialModel.findByIdAndUpdate(req.params.id, {status:globals.status.deleted}).log(req).populate('group_id').populate('supplier_id').lean().exec((err, data) => {
 | 
			
		||||
    MaterialModel.findByIdAndUpdate(req.params.id, {status:globals.status.deleted})
 | 
			
		||||
      .log(req).populate('group_id').populate('supplier_id').lean().exec((err, data) => {
 | 
			
		||||
      if (err) return next(err);
 | 
			
		||||
      if (data) {
 | 
			
		||||
        res.json({status: 'OK'});
 | 
			
		||||
@@ -132,19 +139,19 @@ router.delete('/material/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/material/restore/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  setStatus(globals.status.new, req, res, next);
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/material/validate/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  setStatus(globals.status.validated, req, res, next);
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.post('/material/new', async (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  let {error, value: material} = MaterialValidate.input(req.body, 'new');
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
@@ -167,22 +174,24 @@ router.post('/material/new', async (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/material/groups', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  MaterialGroupModel.find().lean().exec((err, data: any) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
 | 
			
		||||
    res.json(_.compact(data.map(e => MaterialValidate.outputGroups(e.name))));  // validate all and filter null values from validation errors
 | 
			
		||||
    // validate all and filter null values from validation errors
 | 
			
		||||
    res.json(_.compact(data.map(e => MaterialValidate.outputGroups(e.name))));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/material/suppliers', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  MaterialSupplierModel.find().lean().exec((err, data: any) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
 | 
			
		||||
    res.json(_.compact(data.map(e => MaterialValidate.outputSuppliers(e.name))));  // validate all and filter null values from validation errors
 | 
			
		||||
    // validate all and filter null values from validation errors
 | 
			
		||||
    res.json(_.compact(data.map(e => MaterialValidate.outputSuppliers(e.name))));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
@@ -201,7 +210,11 @@ async function nameCheck (material, res, next) {  // check if name was already t
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
async function groupResolve (material, req, next) {
 | 
			
		||||
  const groupData = await MaterialGroupModel.findOneAndUpdate({name: material.group}, {name: material.group}, {upsert: true, new: true}).log(req).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
  const groupData = await MaterialGroupModel.findOneAndUpdate(
 | 
			
		||||
    {name: material.group},
 | 
			
		||||
    {name: material.group},
 | 
			
		||||
    {upsert: true, new: true}
 | 
			
		||||
    ).log(req).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
  if (groupData instanceof Error) return false;
 | 
			
		||||
  material.group_id = groupData._id;
 | 
			
		||||
  delete material.group;
 | 
			
		||||
@@ -209,19 +222,25 @@ async function groupResolve (material, req, next) {
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
async function supplierResolve (material, req, next) {
 | 
			
		||||
  const supplierData = await MaterialSupplierModel.findOneAndUpdate({name: material.supplier}, {name: material.supplier}, {upsert: true, new: true}).log(req).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
  const supplierData = await MaterialSupplierModel.findOneAndUpdate(
 | 
			
		||||
    {name: material.supplier},
 | 
			
		||||
    {name: material.supplier},
 | 
			
		||||
    {upsert: true, new: true}
 | 
			
		||||
    ).log(req).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
  if (supplierData instanceof Error) return false;
 | 
			
		||||
  material.supplier_id = supplierData._id;
 | 
			
		||||
  delete material.supplier;
 | 
			
		||||
  return material;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
async function propertiesCheck (properties, param, res, next, checkVersion = true) {  // validate material properties, returns false if invalid, otherwise template data
 | 
			
		||||
// validate material properties, returns false if invalid, otherwise template data
 | 
			
		||||
async function propertiesCheck (properties, param, res, next, checkVersion = true) {
 | 
			
		||||
  if (!properties.material_template || !IdValidate.valid(properties.material_template)) {  // template id not found
 | 
			
		||||
    res.status(400).json({status: 'Material template not available'});
 | 
			
		||||
    return false;
 | 
			
		||||
  }
 | 
			
		||||
  const materialData = await MaterialTemplateModel.findById(properties.material_template).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
  const materialData = await MaterialTemplateModel.findById(properties.material_template)
 | 
			
		||||
    .lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
  if (materialData instanceof Error) return false;
 | 
			
		||||
  if (!materialData) {  // template not found
 | 
			
		||||
    res.status(400).json({status: 'Material template not available'});
 | 
			
		||||
@@ -230,7 +249,8 @@ async function propertiesCheck (properties, param, res, next, checkVersion = tru
 | 
			
		||||
 | 
			
		||||
  if (checkVersion) {
 | 
			
		||||
    // get all template versions and check if given is latest
 | 
			
		||||
    const materialVersions = await MaterialTemplateModel.find({first_id: materialData.first_id}).sort({version: -1}).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
    const materialVersions = await MaterialTemplateModel.find({first_id: materialData.first_id}).sort({version: -1})
 | 
			
		||||
      .lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
    if (materialVersions instanceof Error) return false;
 | 
			
		||||
    if (properties.material_template !== materialVersions[0]._id.toString()) {  // template not latest
 | 
			
		||||
      res.status(400).json({status: 'Old template version not allowed'});
 | 
			
		||||
@@ -239,7 +259,8 @@ async function propertiesCheck (properties, param, res, next, checkVersion = tru
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // validate parameters
 | 
			
		||||
  const {error, value} = ParametersValidate.input(_.omit(properties, 'material_template'), materialData.parameters, param);
 | 
			
		||||
  const {error, value} = ParametersValidate
 | 
			
		||||
    .input(_.omit(properties, 'material_template'), materialData.parameters, param);
 | 
			
		||||
  if (error) {res400(error, res); return false;}
 | 
			
		||||
  Object.keys(value).forEach(key => {
 | 
			
		||||
    properties[key] = value[key];
 | 
			
		||||
 
 | 
			
		||||
@@ -16,7 +16,7 @@ describe('/measurement', () => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/measurement/800000000000000000000001',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        res: {_id: '800000000000000000000001', sample_id: '400000000000000000000001', values: {dpt: [[3997.12558,98.00555],[3995.08519,98.03253],[3993.04480,98.02657]], device: 'Alpha I'}, measurement_template: '300000000000000000000001'}
 | 
			
		||||
      });
 | 
			
		||||
@@ -25,12 +25,21 @@ describe('/measurement', () => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/measurement/800000000000000000000001',
 | 
			
		||||
        auth: {key: 'janedoe'},
 | 
			
		||||
        auth: {key: 'admin'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        res: {_id: '800000000000000000000001', sample_id: '400000000000000000000001', values: {dpt: [[3997.12558,98.00555],[3995.08519,98.03253],[3993.04480,98.02657]], device: 'Alpha I'}, measurement_template: '300000000000000000000001'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('returns deleted measurements for a maintain/admin user', done => {
 | 
			
		||||
    it('filters out spectral data for a write user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/measurement/800000000000000000000001',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        res: {_id: '800000000000000000000001', sample_id: '400000000000000000000001', values: {device: 'Alpha I'}, measurement_template: '300000000000000000000001'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('returns deleted measurements for a dev/admin user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/measurement/800000000000000000000004',
 | 
			
		||||
@@ -77,7 +86,7 @@ describe('/measurement', () => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'put',
 | 
			
		||||
        url: '/measurement/800000000000000000000001',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        req: {},
 | 
			
		||||
        res: {_id: '800000000000000000000001', sample_id: '400000000000000000000001', values: {dpt: [[3997.12558,98.00555],[3995.08519,98.03253],[3993.04480,98.02657]], device: 'Alpha I'}, measurement_template: '300000000000000000000001'}
 | 
			
		||||
@@ -87,7 +96,7 @@ describe('/measurement', () => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'put',
 | 
			
		||||
        url: '/measurement/800000000000000000000001',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        req: {values: {dpt: [[3997.12558,98.00555],[3995.08519,98.03253],[3993.04480,98.02657]], device: 'Alpha I'}}
 | 
			
		||||
      }).end((err, res) => {
 | 
			
		||||
@@ -121,7 +130,7 @@ describe('/measurement', () => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'put',
 | 
			
		||||
        url: '/measurement/800000000000000000000001',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        req: {values: {dpt: [[1,2],[3,4],[5,6]]}}
 | 
			
		||||
      }).end((err, res) => {
 | 
			
		||||
@@ -244,7 +253,7 @@ describe('/measurement', () => {
 | 
			
		||||
        req: {values: {val1: 2}}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('accepts editing a measurement of another user for a maintain/admin user', done => {
 | 
			
		||||
    it('accepts editing a measurement of another user for a dev/admin user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'put',
 | 
			
		||||
        url: '/measurement/800000000000000000000002',
 | 
			
		||||
@@ -362,7 +371,7 @@ describe('/measurement', () => {
 | 
			
		||||
        httpStatus: 403,
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('accepts deleting a measurement of another user for a maintain/admin user', done => {
 | 
			
		||||
    it('accepts deleting a measurement of another user for a dev/admin user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'delete',
 | 
			
		||||
        url: '/measurement/800000000000000000000001',
 | 
			
		||||
@@ -731,7 +740,7 @@ describe('/measurement', () => {
 | 
			
		||||
        req: {sample_id: '400000000000000000000003', values: {'weight %': 0.8, 'standard deviation': 0.1}, measurement_template: '300000000000000000000002'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('accepts adding a measurement to the sample of another user for a maintain/admin user', done => {
 | 
			
		||||
    it('accepts adding a measurement to the sample of another user for a dev/admin user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'post',
 | 
			
		||||
        url: '/measurement/new',
 | 
			
		||||
 
 | 
			
		||||
@@ -15,21 +15,22 @@ import db from '../db';
 | 
			
		||||
const router = express.Router();
 | 
			
		||||
 | 
			
		||||
router.get('/measurement/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  MeasurementModel.findById(req.params.id).lean().exec((err, data: any) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
    if (!data) {
 | 
			
		||||
      return res.status(404).json({status: 'Not found'});
 | 
			
		||||
    }
 | 
			
		||||
    if (data.status ===globals.status.deleted && !req.auth(res, ['maintain', 'admin'], 'all')) return;  // deleted measurements only available for maintain/admin
 | 
			
		||||
    // deleted measurements only available for dev/admin
 | 
			
		||||
    if (data.status === globals.status.deleted && !req.auth(res, ['dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
    res.json(MeasurementValidate.output(data));
 | 
			
		||||
    res.json(MeasurementValidate.output(data, req));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/measurement/' + IdValidate.parameter(), async (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  const {error, value: measurement} = MeasurementValidate.input(req.body, 'change');
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
@@ -57,14 +58,15 @@ router.put('/measurement/' + IdValidate.parameter(), async (req, res, next) => {
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  if (!await templateCheck(measurement, 'change', res, next)) return;
 | 
			
		||||
  await MeasurementModel.findByIdAndUpdate(req.params.id, measurement, {new: true}).log(req).lean().exec((err, data) => {
 | 
			
		||||
  await MeasurementModel.findByIdAndUpdate(req.params.id, measurement, {new: true})
 | 
			
		||||
    .log(req).lean().exec((err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
    res.json(MeasurementValidate.output(data));
 | 
			
		||||
    res.json(MeasurementValidate.output(data, req));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.delete('/measurement/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  MeasurementModel.findById(req.params.id).lean().exec(async (err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
@@ -72,7 +74,8 @@ router.delete('/measurement/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
      return res.status(404).json({status: 'Not found'});
 | 
			
		||||
    }
 | 
			
		||||
    if (!await sampleIdCheck(data, req, res, next)) return;
 | 
			
		||||
    await MeasurementModel.findByIdAndUpdate(req.params.id, {status:globals.status.deleted}).log(req).lean().exec(err => {
 | 
			
		||||
    await MeasurementModel.findByIdAndUpdate(req.params.id, {status:globals.status.deleted})
 | 
			
		||||
      .log(req).lean().exec(err => {
 | 
			
		||||
      if (err) return next(err);
 | 
			
		||||
      return res.json({status: 'OK'});
 | 
			
		||||
    });
 | 
			
		||||
@@ -80,19 +83,19 @@ router.delete('/measurement/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/measurement/restore/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  setStatus(globals.status.new, req, res, next);
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/measurement/validate/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  setStatus(globals.status.validated, req, res, next);
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.post('/measurement/new', async (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  const {error, value: measurement} = MeasurementValidate.input(req.body, 'new');
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
@@ -105,7 +108,7 @@ router.post('/measurement/new', async (req, res, next) => {
 | 
			
		||||
  await new MeasurementModel(measurement).save((err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
    db.log(req, 'measurements', {_id: data._id}, data.toObject());
 | 
			
		||||
    res.json(MeasurementValidate.output(data.toObject()));
 | 
			
		||||
    res.json(MeasurementValidate.output(data.toObject(), req));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
@@ -113,18 +116,23 @@ router.post('/measurement/new', async (req, res, next) => {
 | 
			
		||||
module.exports = router;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
async function sampleIdCheck (measurement, req, res, next) {  // validate sample_id, returns false if invalid or user has no access for this sample
 | 
			
		||||
  const sampleData = await SampleModel.findById(measurement.sample_id).lean().exec().catch(err => {next(err); return false;}) as any;
 | 
			
		||||
// validate sample_id, returns false if invalid or user has no access for this sample
 | 
			
		||||
async function sampleIdCheck (measurement, req, res, next) {
 | 
			
		||||
  const sampleData = await SampleModel.findById(measurement.sample_id)
 | 
			
		||||
    .lean().exec().catch(err => {next(err); return false;}) as any;
 | 
			
		||||
  if (!sampleData) {  // sample_id not found
 | 
			
		||||
    res.status(400).json({status: 'Sample id not available'});
 | 
			
		||||
    return false
 | 
			
		||||
  }
 | 
			
		||||
  if (sampleData.user_id.toString() !== req.authDetails.id && !req.auth(res, ['maintain', 'admin'], 'basic')) return false;  // sample does not belong to user
 | 
			
		||||
  return true;
 | 
			
		||||
  // sample does not belong to user
 | 
			
		||||
  return !(sampleData.user_id.toString() !== req.authDetails.id && !req.auth(res, ['dev', 'admin'], 'basic'));
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
async function templateCheck (measurement, param, res, next) {  // validate measurement_template and values, returns values, true if values are {} or false if invalid, param for 'new'/'change'
 | 
			
		||||
  const templateData = await MeasurementTemplateModel.findById(measurement.measurement_template).lean().exec().catch(err => {next(err); return false;}) as any;
 | 
			
		||||
// validate measurement_template and values, returns values, true if values are {} or false if invalid,
 | 
			
		||||
// param for 'new'/'change'
 | 
			
		||||
async function templateCheck (measurement, param, res, next) {
 | 
			
		||||
  const templateData = await MeasurementTemplateModel.findById(measurement.measurement_template)
 | 
			
		||||
    .lean().exec().catch(err => {next(err); return false;}) as any;
 | 
			
		||||
  if (!templateData) {  // template not found
 | 
			
		||||
    res.status(400).json({status: 'Measurement template not available'});
 | 
			
		||||
    return false
 | 
			
		||||
@@ -133,7 +141,8 @@ async function templateCheck (measurement, param, res, next) {  // validate meas
 | 
			
		||||
  // fill not given values for new measurements
 | 
			
		||||
  if (param === 'new') {
 | 
			
		||||
    // get all template versions and check if given is latest
 | 
			
		||||
    const templateVersions = await MeasurementTemplateModel.find({first_id: templateData.first_id}).sort({version: -1}).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
    const templateVersions = await MeasurementTemplateModel.find({first_id: templateData.first_id}).sort({version: -1})
 | 
			
		||||
      .lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
    if (templateVersions instanceof Error) return false;
 | 
			
		||||
    if (measurement.measurement_template !== templateVersions[0]._id.toString()) {  // template not latest
 | 
			
		||||
      res.status(400).json({status: 'Old template version not allowed'});
 | 
			
		||||
 
 | 
			
		||||
@@ -179,7 +179,7 @@ describe('/', () => {
 | 
			
		||||
        url: '/authorized',
 | 
			
		||||
        auth: {key: 'admin'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        res: {status: 'Authorization successful', method: 'key', level: 'admin'}
 | 
			
		||||
        res: {status: 'Authorization successful', method: 'key', level: 'admin', user_id: '000000000000000000000003'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('works with basic auth', done => {
 | 
			
		||||
@@ -188,7 +188,7 @@ describe('/', () => {
 | 
			
		||||
        url: '/authorized',
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        res: {status: 'Authorization successful', method: 'basic', level: 'admin'}
 | 
			
		||||
        res: {status: 'Authorization successful', method: 'basic', level: 'admin', user_id: '000000000000000000000003'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
  });
 | 
			
		||||
@@ -207,17 +207,17 @@ describe('/', () => {
 | 
			
		||||
    });
 | 
			
		||||
  });
 | 
			
		||||
 | 
			
		||||
  describe('A not connected database', () => {  // RUN AS LAST OR RECONNECT DATABASE!!
 | 
			
		||||
    it('resolves to an 500 error', done => {
 | 
			
		||||
      db.disconnect(() => {
 | 
			
		||||
        TestHelper.request(server, done, {
 | 
			
		||||
          method: 'get',
 | 
			
		||||
          url: '/',
 | 
			
		||||
          httpStatus: 500
 | 
			
		||||
        });
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
  });
 | 
			
		||||
  // describe('A not connected database', () => {  // RUN AS LAST OR RECONNECT DATABASE!!
 | 
			
		||||
  //   it('resolves to an 500 error', done => {
 | 
			
		||||
  //     db.disconnect(() => {
 | 
			
		||||
  //       TestHelper.request(server, done, {
 | 
			
		||||
  //         method: 'get',
 | 
			
		||||
  //         url: '/',
 | 
			
		||||
  //         httpStatus: 500
 | 
			
		||||
  //       });
 | 
			
		||||
  //     });
 | 
			
		||||
  //   });
 | 
			
		||||
  // });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
describe('The /api/{url} redirect', () => {
 | 
			
		||||
@@ -242,15 +242,15 @@ describe('The /api/{url} redirect', () => {
 | 
			
		||||
      url: '/api/authorized',
 | 
			
		||||
      auth: {basic: 'admin'},
 | 
			
		||||
      httpStatus: 200,
 | 
			
		||||
      res: {status: 'Authorization successful', method: 'basic', level: 'admin'}
 | 
			
		||||
    });
 | 
			
		||||
  });
 | 
			
		||||
  it('is disabled in production', done => {
 | 
			
		||||
    TestHelper.request(server, done, {
 | 
			
		||||
      method: 'get',
 | 
			
		||||
      url: '/api/authorized',
 | 
			
		||||
      auth: {basic: 'admin'},
 | 
			
		||||
      httpStatus: 404
 | 
			
		||||
      res: {status: 'Authorization successful', method: 'basic', level: 'admin', user_id: '000000000000000000000003'}
 | 
			
		||||
    });
 | 
			
		||||
  });
 | 
			
		||||
  // it('is disabled in production', done => {
 | 
			
		||||
  //   TestHelper.request(server, done, {
 | 
			
		||||
  //     method: 'get',
 | 
			
		||||
  //     url: '/api/authorized',
 | 
			
		||||
  //     auth: {basic: 'admin'},
 | 
			
		||||
  //     httpStatus: 404
 | 
			
		||||
  //   });
 | 
			
		||||
  // });
 | 
			
		||||
});
 | 
			
		||||
@@ -14,21 +14,33 @@ router.get('/', (req, res) => {
 | 
			
		||||
 | 
			
		||||
router.get('/authorized', (req, res) => {
 | 
			
		||||
  if (!req.auth(res, globals.levels)) return;
 | 
			
		||||
  res.json({status: 'Authorization successful', method: req.authDetails.method, level: req.authDetails.level});
 | 
			
		||||
  res.json({
 | 
			
		||||
    status: 'Authorization successful',
 | 
			
		||||
    method: req.authDetails.method,
 | 
			
		||||
    level: req.authDetails.level,
 | 
			
		||||
    user_id: req.authDetails.id
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
// TODO: evaluate exact changelog functionality (restoring, delting after time, etc.)
 | 
			
		||||
// TODO: evaluate exact changelog functionality (restoring, deleting after time, etc.)
 | 
			
		||||
router.get('/changelog/:timestamp/:page?/:pagesize?', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  const {error, value: options} = RootValidate.changelogParams({timestamp: req.params.timestamp, page: req.params.page, pagesize: req.params.pagesize});
 | 
			
		||||
  const {error, value: options} = RootValidate.changelogParams({
 | 
			
		||||
    timestamp: req.params.timestamp,
 | 
			
		||||
    page: req.params.page,
 | 
			
		||||
    pagesize: req.params.pagesize
 | 
			
		||||
  });
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
 | 
			
		||||
  const id = new mongoose.Types.ObjectId(Math.floor(new Date(options.timestamp).getTime() / 1000).toString(16) + '0000000000000000');
 | 
			
		||||
  ChangelogModel.find({_id: {$lte: id}}).sort({_id: -1}).skip(options.page * options.pagesize).limit(options.pagesize).lean().exec((err, data) => {
 | 
			
		||||
  const id = new mongoose.Types
 | 
			
		||||
    .ObjectId(Math.floor(new Date(options.timestamp).getTime() / 1000).toString(16) + '0000000000000000');
 | 
			
		||||
  ChangelogModel.find({_id: {$lte: id}}).sort({_id: -1}).skip(options.page * options.pagesize).limit(options.pagesize)
 | 
			
		||||
    .lean().exec((err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
 | 
			
		||||
    res.json(_.compact(data.map(e => RootValidate.changelogOutput(e))));  // validate all and filter null values from validation errors
 | 
			
		||||
    // validate all and filter null values from validation errors
 | 
			
		||||
    res.json(_.compact(data.map(e => RootValidate.changelogOutput(e))));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
 
 | 
			
		||||
@@ -262,7 +262,7 @@ describe('/sample', () => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/samples?status=all&fields[]=number&fields[]=measurements.spectrum.dpt',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 200
 | 
			
		||||
      }).end((err, res) => {
 | 
			
		||||
        if (err) return done(err);
 | 
			
		||||
@@ -379,6 +379,14 @@ describe('/sample', () => {
 | 
			
		||||
        done();
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('rejects returning spectral data for a write user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/samples?status=all&fields[]=number&fields[]=measurements.spectrum.dpt',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        httpStatus: 403
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('rejects an invalid JSON string as a filters parameter', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
@@ -681,7 +689,25 @@ describe('/sample', () => {
 | 
			
		||||
        res: {_id: '400000000000000000000003', number: '33', type: 'part', color: 'black', batch: '1704-005', condition: {material: 'copper', weeks: 3, condition_template: '200000000000000000000001'}, material: {_id: '100000000000000000000005', name: 'Amodel A 1133 HS', supplier: 'Solvay', group: 'PPA', properties: {material_template: '130000000000000000000003', mineral: 0, glass_fiber: 33, carbon_fiber: 0}, numbers: ['5514262406']}, notes: {comment: '', sample_references: [{sample_id: '400000000000000000000004', relation: 'granulate to sample'}], custom_fields: {'not allowed for new applications': true}}, measurements: [{_id: '800000000000000000000003', sample_id: '400000000000000000000003', values: {val1: 1}, measurement_template: '300000000000000000000003'}], user: 'admin'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('returns a deleted sample for a maintain/admin user', done => {
 | 
			
		||||
    it ('filters out spectral data for a write user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/sample/400000000000000000000001',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        res: {_id: '400000000000000000000001', number: '1', type: 'granulate', color: 'black', batch: '', condition: {material: 'copper', weeks: 3, condition_template: '200000000000000000000001'}, material: {numbers: ['5513933405'], _id: '100000000000000000000004', name: 'Schulamid 66 GF 25 H', properties: {material_template: '130000000000000000000003', mineral: 0, glass_fiber: 25, carbon_fiber: 0}, group: 'PA66', supplier: 'Schulmann'}, user: 'janedoe', notes: {}, measurements: [{_id: '800000000000000000000001', sample_id: '400000000000000000000001', values: {device: 'Alpha I'}, measurement_template: '300000000000000000000001'}, {_id: '800000000000000000000007', sample_id: '400000000000000000000001', values: {device: 'Alpha II'}, measurement_template: '300000000000000000000001'}]}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it ('returns spectral data for an admin user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/sample/400000000000000000000001',
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        res: {_id: '400000000000000000000001', number: '1', type: 'granulate', color: 'black', batch: '', condition: {material: 'copper', weeks: 3, condition_template: '200000000000000000000001'}, material: {numbers: ['5513933405'], _id: '100000000000000000000004', name: 'Schulamid 66 GF 25 H', properties: {material_template: '130000000000000000000003', mineral: 0, glass_fiber: 25, carbon_fiber: 0}, group: 'PA66', supplier: 'Schulmann'}, user: 'janedoe', notes: {}, measurements: [{_id: '800000000000000000000001', sample_id: '400000000000000000000001', values: {dpt: [[ 3997.12558, 98.00555 ], [ 3995.08519, 98.03253 ], [ 3993.0448, 98.02657 ]],device: 'Alpha I'}, measurement_template: '300000000000000000000001'}, {_id: '800000000000000000000007', sample_id: '400000000000000000000001', values: {dpt: [[ 3996.12558, 98.00555 ], [ 3995.08519, 98.03253 ], [ 3993.0448, 98.02657 ]], device: 'Alpha II'}, measurement_template: '300000000000000000000001'}]}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('returns a deleted sample for a dev/admin user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/sample/400000000000000000000005',
 | 
			
		||||
@@ -1054,6 +1080,16 @@ describe('/sample', () => {
 | 
			
		||||
        res: {status: 'Condition template not available'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('rejects a not accepted type', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'put',
 | 
			
		||||
        url: '/sample/400000000000000000000001',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        httpStatus: 400,
 | 
			
		||||
        req: {type: 'xx'},
 | 
			
		||||
        res: {status: 'Invalid body format', details: '"type" must be one of [granulate, part, tension rod]'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('allows keeping an empty condition empty', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'put',
 | 
			
		||||
@@ -1121,7 +1157,7 @@ describe('/sample', () => {
 | 
			
		||||
        req: {}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('accepts changes for samples from another user for a maintain/admin user', done => {
 | 
			
		||||
    it('accepts changes for samples from another user for a dev/admin user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'put',
 | 
			
		||||
        url: '/sample/400000000000000000000001',
 | 
			
		||||
@@ -1260,7 +1296,7 @@ describe('/sample', () => {
 | 
			
		||||
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('lets admin/maintain users delete samples of other users', done => {
 | 
			
		||||
    it('lets admin/dev users delete samples of other users', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'delete',
 | 
			
		||||
        url: '/sample/400000000000000000000001',
 | 
			
		||||
@@ -1362,7 +1398,7 @@ describe('/sample', () => {
 | 
			
		||||
        res: {_id: '400000000000000000000003', number: '33', type: 'part', color: 'black', batch: '1704-005', condition: {material: 'copper', weeks: 3, condition_template: '200000000000000000000001'}, material: {_id: '100000000000000000000005', name: 'Amodel A 1133 HS', supplier: 'Solvay', group: 'PPA', properties: {material_template: '130000000000000000000003', mineral: 0, glass_fiber: 33, carbon_fiber: 0}, numbers: ['5514262406']}, notes: {comment: '', sample_references: [{sample_id: '400000000000000000000004', relation: 'granulate to sample'}], custom_fields: {'not allowed for new applications': true}}, measurements: [{_id: '800000000000000000000003', sample_id: '400000000000000000000003', values: {val1: 1}, measurement_template: '300000000000000000000003'}], user: 'admin'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('returns a deleted sample for a maintain/admin user', done => {
 | 
			
		||||
    it('returns a deleted sample for a dev/admin user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/sample/number/Rng33',
 | 
			
		||||
@@ -1371,6 +1407,24 @@ describe('/sample', () => {
 | 
			
		||||
        res: {_id: '400000000000000000000005', number: 'Rng33', type: 'granulate', color: 'black', batch: '1653000308', condition: {condition_template: '200000000000000000000003'}, material: {_id: '100000000000000000000005', name: 'Amodel A 1133 HS', supplier: 'Solvay', group: 'PPA', properties: {material_template: '130000000000000000000003', mineral: 0, glass_fiber: 33, carbon_fiber: 0}, numbers: ['5514262406']}, notes: {}, measurements: [], user: 'admin'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it ('filters out spectral data for a write user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/sample/number/1',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        res: {_id: '400000000000000000000001', number: '1', type: 'granulate', color: 'black', batch: '', condition: {material: 'copper', weeks: 3, condition_template: '200000000000000000000001'}, material: {numbers: ['5513933405'], _id: '100000000000000000000004', name: 'Schulamid 66 GF 25 H', properties: {material_template: '130000000000000000000003', mineral: 0, glass_fiber: 25, carbon_fiber: 0}, group: 'PA66', supplier: 'Schulmann'}, user: 'janedoe', notes: {}, measurements: [{_id: '800000000000000000000001', sample_id: '400000000000000000000001', values: {device: 'Alpha I'}, measurement_template: '300000000000000000000001'}, {_id: '800000000000000000000007', sample_id: '400000000000000000000001', values: {device: 'Alpha II'}, measurement_template: '300000000000000000000001'}]}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it ('returns spectral data for an admin user', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
        url: '/sample/number/1',
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        res: {_id: '400000000000000000000001', number: '1', type: 'granulate', color: 'black', batch: '', condition: {material: 'copper', weeks: 3, condition_template: '200000000000000000000001'}, material: {numbers: ['5513933405'], _id: '100000000000000000000004', name: 'Schulamid 66 GF 25 H', properties: {material_template: '130000000000000000000003', mineral: 0, glass_fiber: 25, carbon_fiber: 0}, group: 'PA66', supplier: 'Schulmann'}, user: 'janedoe', notes: {}, measurements: [{_id: '800000000000000000000001', sample_id: '400000000000000000000001', values: {dpt: [[ 3997.12558, 98.00555 ], [ 3995.08519, 98.03253 ], [ 3993.0448, 98.02657 ]],device: 'Alpha I'}, measurement_template: '300000000000000000000001'}, {_id: '800000000000000000000007', sample_id: '400000000000000000000001', values: {dpt: [[ 3996.12558, 98.00555 ], [ 3995.08519, 98.03253 ], [ 3993.0448, 98.02657 ]], device: 'Alpha II'}, measurement_template: '300000000000000000000001'}]}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('returns 403 for a write user when requesting a deleted sample', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'get',
 | 
			
		||||
@@ -1513,24 +1567,38 @@ describe('/sample', () => {
 | 
			
		||||
        }
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('rejects validating a sample without condition', done => {
 | 
			
		||||
    it('allows validating a sample without condition', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'put',
 | 
			
		||||
        url: '/sample/validate/400000000000000000000006',
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 400,
 | 
			
		||||
        req: {},
 | 
			
		||||
        res: {status: 'Sample without condition cannot be valid'}
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        req: {}
 | 
			
		||||
      }).end((err, res) => {
 | 
			
		||||
        if (err) return done (err);
 | 
			
		||||
        should(res.body).be.eql({status: 'OK'});
 | 
			
		||||
        SampleModel.findById('400000000000000000000006').lean().exec((err, data: any) => {
 | 
			
		||||
          if (err) return done(err);
 | 
			
		||||
          should(data).have.property('status',globals.status.validated);
 | 
			
		||||
          done();
 | 
			
		||||
        });
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('rejects validating a sample without measurements', done => {
 | 
			
		||||
    it('allows validating a sample without measurements', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'put',
 | 
			
		||||
        url: '/sample/validate/400000000000000000000004',
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 400,
 | 
			
		||||
        req: {},
 | 
			
		||||
        res: {status: 'Sample without measurements cannot be valid'}
 | 
			
		||||
        httpStatus: 200,
 | 
			
		||||
        req: {}
 | 
			
		||||
      }).end((err, res) => {
 | 
			
		||||
        if (err) return done (err);
 | 
			
		||||
        should(res.body).be.eql({status: 'OK'});
 | 
			
		||||
        SampleModel.findById('400000000000000000000004').lean().exec((err, data: any) => {
 | 
			
		||||
          if (err) return done(err);
 | 
			
		||||
          should(data).have.property('status',globals.status.validated);
 | 
			
		||||
          done();
 | 
			
		||||
        });
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('rejects an API key', done => {
 | 
			
		||||
@@ -1937,6 +2005,16 @@ describe('/sample', () => {
 | 
			
		||||
        res: {status: 'Invalid body format', details: 'Invalid object id'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('rejects a not accepted type', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'post',
 | 
			
		||||
        url: '/sample/new',
 | 
			
		||||
        auth: {basic: 'janedoe'},
 | 
			
		||||
        httpStatus: 400,
 | 
			
		||||
        req: {color: 'black', type: 'xx', batch: '1560237365', material_id: '100000000000000000000001', notes: {comment: 'Testcomment'}},
 | 
			
		||||
        res: {status: 'Invalid body format', details: '"type" must be one of [granulate, part, tension rod]'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('rejects an API key', done => {
 | 
			
		||||
      TestHelper.request(server, done, {
 | 
			
		||||
        method: 'post',
 | 
			
		||||
 
 | 
			
		||||
@@ -28,14 +28,19 @@ const router = express.Router();
 | 
			
		||||
 | 
			
		||||
// TODO: think about filter keys with measurement template versions
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
router.get('/samples', async (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  const {error, value: filters} = SampleValidate.query(req.query);
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
 | 
			
		||||
  // spectral data not allowed for read/write users
 | 
			
		||||
  if (filters.fields.find(e => /\.dpt$/.test(e)) && !req.auth(res, ['dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  // TODO: find a better place for these
 | 
			
		||||
  const sampleKeys = ['_id', 'color', 'number', 'type', 'batch', 'added', 'condition', 'material_id', 'note_id', 'user_id'];
 | 
			
		||||
  const sampleKeys = ['_id', 'color', 'number', 'type', 'batch', 'added', 'condition', 'material_id', 'note_id',
 | 
			
		||||
    'user_id'];
 | 
			
		||||
 | 
			
		||||
  // evaluate sort parameter from 'color-asc' to ['color', 1]
 | 
			
		||||
  filters.sort = filters.sort.split('-');
 | 
			
		||||
@@ -74,7 +79,8 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
    }
 | 
			
		||||
    else {
 | 
			
		||||
      // start and end of day
 | 
			
		||||
      const date = [new Date(addedFilter.values[0]).setHours(0,0,0,0), new Date(addedFilter.values[0]).setHours(23,59,59,999)];
 | 
			
		||||
      const date = [new Date(addedFilter.values[0]).setHours(0,0,0,0),
 | 
			
		||||
        new Date(addedFilter.values[0]).setHours(23,59,59,999)];
 | 
			
		||||
      if (addedFilter.mode === 'lt') {  // lt start
 | 
			
		||||
        filters.filters.push({mode: 'lt', field: '_id', values: [dateToOId(date[0])]});
 | 
			
		||||
      }
 | 
			
		||||
@@ -88,7 +94,8 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
        filters.filters.push({mode: 'gte', field: '_id', values: [dateToOId(date[0])]});
 | 
			
		||||
      }
 | 
			
		||||
      if (addedFilter.mode === 'ne') {
 | 
			
		||||
        filters.filters.push({mode: 'or', field: '_id', values: [{ _id: { '$lt': dateToOId(date[0])}}, { _id: { '$gt': dateToOId(date[1])}}]});
 | 
			
		||||
        filters.filters.push({mode: 'or', field: '_id',
 | 
			
		||||
          values: [{ _id: { '$lt': dateToOId(date[0])}}, { _id: { '$gt': dateToOId(date[1])}}]});
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
@@ -103,27 +110,31 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
  if (filters.sort[0].indexOf('measurements.') >= 0) {  // sorting with measurements as starting collection
 | 
			
		||||
    collection = MeasurementModel;
 | 
			
		||||
    const [,measurementName, measurementParam] = filters.sort[0].split('.');
 | 
			
		||||
    const measurementTemplates = await MeasurementTemplateModel.find({name: measurementName}).lean().exec().catch(err => {next(err);});
 | 
			
		||||
    const measurementTemplates = await MeasurementTemplateModel.find({name: measurementName})
 | 
			
		||||
      .lean().exec().catch(err => {next(err);});
 | 
			
		||||
    if (measurementTemplates instanceof Error) return;
 | 
			
		||||
    if (!measurementTemplates) {
 | 
			
		||||
      return res.status(400).json({status: 'Invalid body format', details: filters.sort[0] + ' not found'});
 | 
			
		||||
    }
 | 
			
		||||
    let sortStartValue = null;
 | 
			
		||||
    if (filters['from-id']) {  // from-id specified, fetch values for sorting
 | 
			
		||||
      const fromSample = await MeasurementModel.findOne({sample_id: mongoose.Types.ObjectId(filters['from-id'])}).lean().exec().catch(err => {next(err);});  // TODO: what if more than one measurement for sample?
 | 
			
		||||
      const fromSample = await MeasurementModel.findOne({sample_id: mongoose.Types.ObjectId(filters['from-id'])})
 | 
			
		||||
        .lean().exec().catch(err => {next(err);});  // TODO: what if more than one measurement for sample?
 | 
			
		||||
      if (fromSample instanceof Error) return;
 | 
			
		||||
      if (!fromSample) {
 | 
			
		||||
        return res.status(400).json({status: 'Invalid body format', details: 'from-id not found'});
 | 
			
		||||
      }
 | 
			
		||||
      sortStartValue = fromSample.values[measurementParam];
 | 
			
		||||
    }
 | 
			
		||||
    queryPtr[0].$match.$and.push({measurement_template: {$in: measurementTemplates.map(e => e._id)}});  // find measurements to sort
 | 
			
		||||
    // find measurements to sort
 | 
			
		||||
    queryPtr[0].$match.$and.push({measurement_template: {$in: measurementTemplates.map(e => e._id)}});
 | 
			
		||||
    if (filters.filters.find(e => e.field === filters.sort[0])) {  // sorted measurement should also be filtered
 | 
			
		||||
      queryPtr[0].$match.$and.push(...filterQueries(filters.filters.filter(e => e.field === filters.sort[0]).map(e => {e.field = 'values.' + e.field.split('.')[2]; return e; })));
 | 
			
		||||
      queryPtr[0].$match.$and.push(...filterQueries(filters.filters.filter(e => e.field === filters.sort[0])
 | 
			
		||||
        .map(e => {e.field = 'values.' + e.field.split('.')[2]; return e; })));
 | 
			
		||||
    }
 | 
			
		||||
    queryPtr.push(
 | 
			
		||||
      ...sortQuery(filters, ['values.' + measurementParam, 'sample_id'], sortStartValue),  // sort measurements
 | 
			
		||||
      {$replaceRoot: {newRoot: {measurement: '$$ROOT'}}},                                  // fetch samples and restructure them to fit sample structure
 | 
			
		||||
      {$replaceRoot: {newRoot: {measurement: '$$ROOT'}}},  // fetch samples and restructure them to fit sample structure
 | 
			
		||||
      {$lookup: {from: 'samples', localField: 'measurement.sample_id', foreignField: '_id', as: 'sample'}},
 | 
			
		||||
      {$match: statusQuery(filters, 'sample.status')},  // filter out wrong status once samples were added
 | 
			
		||||
      {$addFields: {['sample.' + measurementName]: '$measurement.values'}},  // more restructuring
 | 
			
		||||
@@ -159,43 +170,52 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
  let materialAdded = false;
 | 
			
		||||
  if (sortFilterKeys.find(e => /material\./.test(e))) {  //  add material fields
 | 
			
		||||
    materialAdded = true;
 | 
			
		||||
    materialQuery.push(  // add material properties
 | 
			
		||||
      {$lookup: {from: 'materials', localField: 'material_id', foreignField: '_id', as: 'material'}},  // TODO: project out unnecessary fields
 | 
			
		||||
    materialQuery.push(  // add material properties  // TODO: project out unnecessary fields
 | 
			
		||||
      {$lookup: {from: 'materials', localField: 'material_id', foreignField: '_id', as: 'material'}},
 | 
			
		||||
      {$addFields: {material: {$arrayElemAt: ['$material', 0]}}}
 | 
			
		||||
    );
 | 
			
		||||
    const baseMFilters = sortFilterKeys.filter(e => /material\./.test(e)).filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) < 0);
 | 
			
		||||
    addFilterQueries(materialQuery, filters.filters.filter(e => baseMFilters.indexOf(e.field) >= 0));  // base material filters
 | 
			
		||||
    const baseMFilters = sortFilterKeys.filter(e => /material\./.test(e))
 | 
			
		||||
      .filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) < 0);
 | 
			
		||||
    // base material filters
 | 
			
		||||
    addFilterQueries(materialQuery, filters.filters.filter(e => baseMFilters.indexOf(e.field) >= 0));
 | 
			
		||||
    if (sortFilterKeys.find(e => e === 'material.supplier')) {  // add supplier if needed
 | 
			
		||||
      materialQuery.push(
 | 
			
		||||
        {$lookup: { from: 'material_suppliers', localField: 'material.supplier_id', foreignField: '_id', as: 'material.supplier'}},
 | 
			
		||||
        {$lookup: {
 | 
			
		||||
          from: 'material_suppliers', localField: 'material.supplier_id', foreignField: '_id', as: 'material.supplier'}
 | 
			
		||||
        },
 | 
			
		||||
        {$addFields: {'material.supplier': {$arrayElemAt: ['$material.supplier.name', 0]}}}
 | 
			
		||||
      );
 | 
			
		||||
    }
 | 
			
		||||
    if (sortFilterKeys.find(e => e === 'material.group')) {  // add group if needed
 | 
			
		||||
      materialQuery.push(
 | 
			
		||||
        {$lookup: { from: 'material_groups', localField: 'material.group_id', foreignField: '_id', as: 'material.group' }},
 | 
			
		||||
        {$lookup: {
 | 
			
		||||
          from: 'material_groups', localField: 'material.group_id', foreignField: '_id', as: 'material.group' }
 | 
			
		||||
        },
 | 
			
		||||
        {$addFields: {'material.group': { $arrayElemAt: ['$material.group.name', 0]}}}
 | 
			
		||||
      );
 | 
			
		||||
    }
 | 
			
		||||
    if (sortFilterKeys.find(e => e === 'material.number')) {  // add material number if needed
 | 
			
		||||
      materialQuery.push(
 | 
			
		||||
        {$addFields: {'material.number': { $arrayElemAt: ['$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}]}}}
 | 
			
		||||
        {$addFields: {'material.number': { $arrayElemAt: [
 | 
			
		||||
          '$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}
 | 
			
		||||
        ]}}}
 | 
			
		||||
      );
 | 
			
		||||
    }
 | 
			
		||||
    const specialMFilters = sortFilterKeys.filter(e => /material\./.test(e)).filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) >= 0);
 | 
			
		||||
    addFilterQueries(materialQuery, filters.filters.filter(e => specialMFilters.indexOf(e.field) >= 0));  // base material filters
 | 
			
		||||
    const specialMFilters = sortFilterKeys.filter(e => /material\./.test(e))
 | 
			
		||||
      .filter(e => ['material.supplier', 'material.group', 'material.number'].indexOf(e) >= 0);
 | 
			
		||||
    // base material filters
 | 
			
		||||
    addFilterQueries(materialQuery, filters.filters.filter(e => specialMFilters.indexOf(e.field) >= 0));
 | 
			
		||||
    queryPtr.push(...materialQuery);
 | 
			
		||||
    if (/material\./.test(filters.sort[0])) {  // sort by material key
 | 
			
		||||
      let sortStartValue = null;
 | 
			
		||||
      if (filters['from-id']) {  // from-id specified
 | 
			
		||||
        const fromSample = await SampleModel.aggregate([{$match: {_id: mongoose.Types.ObjectId(filters['from-id'])}}, ...materialQuery]).exec().catch(err => {next(err);});
 | 
			
		||||
        const fromSample = await SampleModel.aggregate(
 | 
			
		||||
          [{$match: {_id: mongoose.Types.ObjectId(filters['from-id'])}}, ...materialQuery]
 | 
			
		||||
        ).exec().catch(err => {next(err);});
 | 
			
		||||
        if (fromSample instanceof Error) return;
 | 
			
		||||
        if (!fromSample) {
 | 
			
		||||
          return res.status(400).json({status: 'Invalid body format', details: 'from-id not found'});
 | 
			
		||||
        }
 | 
			
		||||
        console.log(fromSample);
 | 
			
		||||
        console.log(filters.sort[0]);
 | 
			
		||||
        console.log(fromSample[filters.sort[0]]);
 | 
			
		||||
        const filterKey = filters.sort[0].split('.');
 | 
			
		||||
        if (filterKey.length === 2) {
 | 
			
		||||
          sortStartValue = fromSample[0][filterKey[0]][filterKey[1]];
 | 
			
		||||
@@ -208,23 +228,25 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  const measurementFilterFields = _.uniq(sortFilterKeys.filter(e => /measurements\./.test(e)).map(e => e.split('.')[1]));  // filter measurement names and remove duplicates from parameters
 | 
			
		||||
  const measurementFilterFields = _.uniq(sortFilterKeys.filter(e => /measurements\./.test(e))
 | 
			
		||||
    .map(e => e.split('.')[1]));  // filter measurement names and remove duplicates from parameters
 | 
			
		||||
  if (sortFilterKeys.find(e => /measurements\./.test(e))) {  //  add measurement fields
 | 
			
		||||
    const measurementTemplates = await MeasurementTemplateModel.find({name: {$in: measurementFilterFields}}).lean().exec().catch(err => {next(err);});
 | 
			
		||||
    const measurementTemplates = await MeasurementTemplateModel.find({name: {$in: measurementFilterFields}})
 | 
			
		||||
      .lean().exec().catch(err => {next(err);});
 | 
			
		||||
    if (measurementTemplates instanceof Error) return;
 | 
			
		||||
    if (measurementTemplates.length < measurementFilterFields.length) {
 | 
			
		||||
      return res.status(400).json({status: 'Invalid body format', details: 'Measurement key not found'});
 | 
			
		||||
    }
 | 
			
		||||
    queryPtr.push({$lookup: {
 | 
			
		||||
        from: 'measurements', let: {sId: '$_id'},
 | 
			
		||||
        pipeline: [{$match: {$expr: {$and: [{$eq: ['$sample_id', '$$sId']}, {$in: ['$measurement_template', measurementTemplates.map(e => mongoose.Types.ObjectId(e._id))]}]}}}],
 | 
			
		||||
        pipeline: [{$match: {$expr: {$and: [
 | 
			
		||||
          {$eq: ['$sample_id', '$$sId']},
 | 
			
		||||
          {$in: ['$measurement_template', measurementTemplates.map(e => mongoose.Types.ObjectId(e._id))]}
 | 
			
		||||
        ]}}}],
 | 
			
		||||
        as: 'measurements'
 | 
			
		||||
    }});
 | 
			
		||||
    measurementTemplates.forEach(template => {
 | 
			
		||||
      queryPtr.push({$addFields: {[template.name]: {$let: {  // add measurements as property [template.name], if one result, array is reduced to direct values
 | 
			
		||||
        vars: {arr: {$filter: {input: '$measurements', cond: {$eq: ['$$this.measurement_template', mongoose.Types.ObjectId(template._id)]}}}},
 | 
			
		||||
        in:{$cond: [{$lte: [{$size: '$$arr'}, 1]}, {$arrayElemAt: ['$$arr', 0]}, '$$arr']}
 | 
			
		||||
      }}}}, {$addFields: {[template.name]: {$cond: ['$' + template.name + '.values', '$' + template.name + '.values', template.parameters.reduce((s, e) => {s[e.name] = null; return s;}, {})]}}});
 | 
			
		||||
      addMeasurements(queryPtr, template);
 | 
			
		||||
    });
 | 
			
		||||
    addFilterQueries(queryPtr, filters.filters
 | 
			
		||||
      .filter(e => sortFilterKeys.filter(e => /measurements\./.test(e)).indexOf(e.field) >= 0)
 | 
			
		||||
@@ -232,14 +254,18 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
    );  // measurement filters
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  if (!filters.fields.find(e => /spectrum\./.test(e)) && !filters['from-id']) {  // count total number of items before $skip and $limit, only works when from-id is not specified and spectra are not included
 | 
			
		||||
  // count total number of items before $skip and $limit, only works when from-id is not specified and spectra are not
 | 
			
		||||
  // included
 | 
			
		||||
  if (!filters.fields.find(e => /spectrum\./.test(e)) && !filters['from-id']) {
 | 
			
		||||
    queryPtr.push({$facet: {count: [{$count: 'count'}], samples: []}});
 | 
			
		||||
    queryPtr = queryPtr[queryPtr.length - 1].$facet.samples;  // add rest of aggregation pipeline into $facet
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // paging
 | 
			
		||||
  if (filters['to-page']) {
 | 
			
		||||
    queryPtr.push({$skip: Math.abs(filters['to-page'] + Number(filters['to-page'] < 0)) * filters['page-size'] + Number(filters['to-page'] < 0)})  // number to skip, if going back pages, one page has to be skipped less but on sample more
 | 
			
		||||
    // number to skip, if going back pages, one page has to be skipped less but on sample more
 | 
			
		||||
    queryPtr.push({$skip: Math.abs(filters['to-page'] + Number(filters['to-page'] < 0)) * filters['page-size'] +
 | 
			
		||||
      Number(filters['to-page'] < 0)})
 | 
			
		||||
  }
 | 
			
		||||
  if (filters['page-size']) {
 | 
			
		||||
    queryPtr.push({$limit: filters['page-size']});
 | 
			
		||||
@@ -265,51 +291,65 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
  }
 | 
			
		||||
  if (fieldsToAdd.indexOf('material.supplier') >= 0) {  // add supplier if needed
 | 
			
		||||
    queryPtr.push(
 | 
			
		||||
      {$lookup: { from: 'material_suppliers', localField: 'material.supplier_id', foreignField: '_id', as: 'material.supplier'}},
 | 
			
		||||
      {$lookup: {
 | 
			
		||||
        from: 'material_suppliers', localField: 'material.supplier_id', foreignField: '_id', as: 'material.supplier'
 | 
			
		||||
      }},
 | 
			
		||||
      {$addFields: {'material.supplier': {$arrayElemAt: ['$material.supplier.name', 0]}}}
 | 
			
		||||
    );
 | 
			
		||||
  }
 | 
			
		||||
  if (fieldsToAdd.indexOf('material.group') >= 0) {  // add group if needed
 | 
			
		||||
    queryPtr.push(
 | 
			
		||||
      {$lookup: { from: 'material_groups', localField: 'material.group_id', foreignField: '_id', as: 'material.group' }},
 | 
			
		||||
      {$lookup: {
 | 
			
		||||
        from: 'material_groups', localField: 'material.group_id', foreignField: '_id', as: 'material.group'
 | 
			
		||||
      }},
 | 
			
		||||
      {$addFields: {'material.group': { $arrayElemAt: ['$material.group.name', 0]}}}
 | 
			
		||||
    );
 | 
			
		||||
  }
 | 
			
		||||
  if (fieldsToAdd.indexOf('material.number') >= 0) {  // add material number if needed
 | 
			
		||||
    queryPtr.push(
 | 
			
		||||
      {$addFields: {'material.number': { $arrayElemAt: ['$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}]}}}
 | 
			
		||||
      {$addFields: {'material.number': {
 | 
			
		||||
        $arrayElemAt: ['$material.numbers.number', {$indexOfArray: ['$material.numbers.color', '$color']}]
 | 
			
		||||
      }}}
 | 
			
		||||
    );
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  let measurementFieldsFields: string[] = _.uniq(fieldsToAdd.filter(e => /measurements\./.test(e)).map(e => e.split('.')[1]));  // filter measurement names and remove duplicates from parameters
 | 
			
		||||
  let measurementFieldsFields: string[] = _.uniq(
 | 
			
		||||
    fieldsToAdd.filter(e => /measurements\./.test(e)).map(e => e.split('.')[1])
 | 
			
		||||
  );  // filter measurement names and remove duplicates from parameters
 | 
			
		||||
  if (fieldsToAdd.find(e => /measurements\./.test(e))) {  // add measurement fields
 | 
			
		||||
    const measurementTemplates = await MeasurementTemplateModel.find({name: {$in: measurementFieldsFields}}).lean().exec().catch(err => {next(err);});
 | 
			
		||||
    const measurementTemplates = await MeasurementTemplateModel.find({name: {$in: measurementFieldsFields}})
 | 
			
		||||
      .lean().exec().catch(err => {next(err);});
 | 
			
		||||
    if (measurementTemplates instanceof Error) return;
 | 
			
		||||
    if (measurementTemplates.length < measurementFieldsFields.length) {
 | 
			
		||||
      return res.status(400).json({status: 'Invalid body format', details: 'Measurement key not found'});
 | 
			
		||||
    }
 | 
			
		||||
    if (fieldsToAdd.find(e => /spectrum\./.test(e))) {  // use different lookup methods with and without spectrum for the best performance
 | 
			
		||||
      queryPtr.push({$lookup: {from: 'measurements', localField: '_id', foreignField: 'sample_id', as: 'measurements'}});
 | 
			
		||||
    // use different lookup methods with and without spectrum for the best performance
 | 
			
		||||
    if (fieldsToAdd.find(e => /spectrum\./.test(e))) {
 | 
			
		||||
      queryPtr.push(
 | 
			
		||||
        {$lookup: {from: 'measurements', localField: '_id', foreignField: 'sample_id', as: 'measurements'}}
 | 
			
		||||
      );
 | 
			
		||||
    }
 | 
			
		||||
    else {
 | 
			
		||||
      queryPtr.push({$lookup: {
 | 
			
		||||
          from: 'measurements', let: {sId: '$_id'},
 | 
			
		||||
          pipeline: [{$match: {$expr: {$and: [{$eq: ['$sample_id', '$$sId']}, {$in: ['$measurement_template', measurementTemplates.map(e => mongoose.Types.ObjectId(e._id))]}]}}}],
 | 
			
		||||
          pipeline: [{$match: {$expr: {$and: [
 | 
			
		||||
            {$eq: ['$sample_id', '$$sId']},
 | 
			
		||||
            {$in: ['$measurement_template', measurementTemplates.map(e => mongoose.Types.ObjectId(e._id))]}
 | 
			
		||||
          ]}}}],
 | 
			
		||||
          as: 'measurements'
 | 
			
		||||
        }});
 | 
			
		||||
    }
 | 
			
		||||
    measurementTemplates.forEach(template => {  // TODO: hard coded dpt for special treatment, change later
 | 
			
		||||
      queryPtr.push({$addFields: {[template.name]: {$let: {  // add measurements as property [template.name], if one result, array is reduced to direct values
 | 
			
		||||
              vars: {arr: {$filter: {input: '$measurements', cond: {$eq: ['$$this.measurement_template', mongoose.Types.ObjectId(template._id)]}}}},
 | 
			
		||||
              in:{$cond: [{$lte: [{$size: '$$arr'}, 1]}, {$arrayElemAt: ['$$arr', 0]}, '$$arr']}
 | 
			
		||||
            }}}}, {$addFields: {[template.name]: {$cond: ['$' + template.name + '.values', '$' + template.name + '.values', template.parameters.reduce((s, e) => {s[e.name] = null; return s;}, {})]}}});
 | 
			
		||||
      addMeasurements(queryPtr, template);
 | 
			
		||||
      if (measurementFieldsFields.find(e => e === 'spectrum')) {
 | 
			
		||||
        queryPtr.push({$unwind: '$spectrum'});
 | 
			
		||||
      }
 | 
			
		||||
    });
 | 
			
		||||
    // if (measurementFieldsFields.find(e => e === 'spectrum')) {  // TODO: remove hardcoded as well
 | 
			
		||||
    //   queryPtr.push(
 | 
			
		||||
    //     {$addFields: {spectrum: {$filter: {input: '$measurements', cond: {$eq: ['$$this.measurement_template', measurementTemplates.filter(e => e.name === 'spectrum')[0]._id]}}}}},
 | 
			
		||||
    //     {$addFields: {spectrum: {$filter: {input: '$measurements', cond: {
 | 
			
		||||
    //       $eq: ['$$this.measurement_template', measurementTemplates.filter(e => e.name === 'spectrum')[0]._id]
 | 
			
		||||
    //     }}}}},
 | 
			
		||||
    //     {$addFields: {spectrum: '$spectrum.values'}},
 | 
			
		||||
    //     {$unwind: '$spectrum'}
 | 
			
		||||
    //   );
 | 
			
		||||
@@ -318,10 +358,11 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
    queryPtr.push({$project: {measurements: 0}});
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  const projection = filters.fields.map(e => e.replace('measurements.', '')).reduce((s, e) => {s[e] = true; return s; }, {});
 | 
			
		||||
  if (filters.fields.indexOf('added') >= 0) {  // add added date
 | 
			
		||||
  const projection = filters.fields.map(e => e.replace('measurements.', ''))
 | 
			
		||||
    .reduce((s, e) => {s[e] = true; return s; }, {});
 | 
			
		||||
  if (filters.fields.indexOf('added') >= 0) {  // add added date  // TODO: upgrade MongoDB version or find alternative
 | 
			
		||||
    // projection.added = {$toDate: '$_id'};
 | 
			
		||||
    // projection.added = { $convert: { input: '$_id', to: "date" } }  // TODO: upgrade MongoDB version or find alternative
 | 
			
		||||
    // projection.added = { $convert: { input: '$_id', to: "date" } }
 | 
			
		||||
  }
 | 
			
		||||
  if (filters.fields.indexOf('_id') < 0 && filters.fields.indexOf('added') < 0) {  // disable _id explicitly
 | 
			
		||||
    projection._id = false;
 | 
			
		||||
@@ -347,7 +388,10 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
      if (filters['to-page'] < 0) {
 | 
			
		||||
        data.reverse();
 | 
			
		||||
      }
 | 
			
		||||
      const measurementFields = _.uniq([filters.sort[0].split('.')[1], ...measurementFilterFields, ...measurementFieldsFields]);
 | 
			
		||||
      const measurementFields = _.uniq(
 | 
			
		||||
        [filters.sort[0].split('.')[1],
 | 
			
		||||
        ...measurementFilterFields, ...measurementFieldsFields]
 | 
			
		||||
      );
 | 
			
		||||
      if (filters.csv) {  // output as csv
 | 
			
		||||
        csv(_.compact(data.map(e => SampleValidate.output(e, 'refs', measurementFields))), (err, data) => {
 | 
			
		||||
          if (err) return next(err);
 | 
			
		||||
@@ -355,8 +399,8 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
          res.send(data);
 | 
			
		||||
        });
 | 
			
		||||
      }
 | 
			
		||||
      else {
 | 
			
		||||
        res.json(_.compact(data.map(e => SampleValidate.output(e, 'refs', measurementFields))));  // validate all and filter null values from validation errors
 | 
			
		||||
      else {  // validate all and filter null values from validation errors
 | 
			
		||||
        res.json(_.compact(data.map(e => SampleValidate.output(e, 'refs', measurementFields))));
 | 
			
		||||
      }
 | 
			
		||||
    });
 | 
			
		||||
  }
 | 
			
		||||
@@ -385,16 +429,17 @@ router.get('/samples', async (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/samples/:state(new|deleted)', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  SampleModel.find({status: globals.status[req.params.state]}).lean().exec((err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
    res.json(_.compact(data.map(e => SampleValidate.output(e))));  // validate all and filter null values from validation errors
 | 
			
		||||
    // validate all and filter null values from validation errors
 | 
			
		||||
    res.json(_.compact(data.map(e => SampleValidate.output(e))));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/samples/count', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  SampleModel.estimatedDocumentCount((err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
@@ -403,18 +448,20 @@ router.get('/samples/count', (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  SampleModel.findById(req.params.id).populate('material_id').populate('user_id', 'name').populate('note_id').exec(async (err, sampleData: any) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
  SampleModel.findById(req.params.id).populate('material_id').populate('user_id', 'name').populate('note_id')
 | 
			
		||||
    .exec(async (err, sampleData: any) => {
 | 
			
		||||
      if (err) return next(err);
 | 
			
		||||
    await sampleReturn(sampleData, req, res, next);
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  const {error, value: sample} = SampleValidate.input(req.body, 'change');
 | 
			
		||||
  console.log(error);
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
 | 
			
		||||
  SampleModel.findById(req.params.id).lean().exec(async (err, sampleData: any) => {  // check if id exists
 | 
			
		||||
@@ -426,16 +473,19 @@ router.put('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
      return res.status(403).json({status: 'Forbidden'});
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    // only maintain and admin are allowed to edit other user's data
 | 
			
		||||
    if (sampleData.user_id.toString() !== req.authDetails.id && !req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
    // only dev and admin are allowed to edit other user's data
 | 
			
		||||
    if (sampleData.user_id.toString() !== req.authDetails.id && !req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
    if (sample.hasOwnProperty('material_id')) {
 | 
			
		||||
      if (!await materialCheck(sample, res, next)) return;
 | 
			
		||||
    }
 | 
			
		||||
    else if (sample.hasOwnProperty('color')) {
 | 
			
		||||
      if (!await materialCheck(sample, res, next, sampleData.material_id)) return;
 | 
			
		||||
    }
 | 
			
		||||
    if (sample.hasOwnProperty('condition') && !(_.isEmpty(sample.condition) && _.isEmpty(sampleData.condition))) {  // do not execute check if condition is and was empty
 | 
			
		||||
      if (!await conditionCheck(sample.condition, 'change', res, next, sampleData.condition.condition_template.toString() !== sample.condition.condition_template)) return;
 | 
			
		||||
    // do not execute check if condition is and was empty
 | 
			
		||||
    if (sample.hasOwnProperty('condition') && !(_.isEmpty(sample.condition) && _.isEmpty(sampleData.condition))) {
 | 
			
		||||
      if (!await conditionCheck(sample.condition, 'change', res, next,
 | 
			
		||||
        !(sampleData.condition.condition_template &&
 | 
			
		||||
        sampleData.condition.condition_template.toString() === sample.condition.condition_template))) return;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    if (sample.hasOwnProperty('notes')) {
 | 
			
		||||
@@ -443,7 +493,8 @@ router.put('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
      if (sampleData.note_id !== null) {  // old notes data exists
 | 
			
		||||
        const data = await NoteModel.findById(sampleData.note_id).lean().exec().catch(err => {next(err);}) as any;
 | 
			
		||||
        if (data instanceof Error) return;
 | 
			
		||||
        newNotes = !_.isEqual(_.pick(IdValidate.stringify(data), _.keys(sample.notes)), sample.notes);  // check if notes were changed
 | 
			
		||||
        // check if notes were changed
 | 
			
		||||
        newNotes = !_.isEqual(_.pick(IdValidate.stringify(data), _.keys(sample.notes)), sample.notes);
 | 
			
		||||
        if (newNotes) {
 | 
			
		||||
          if (data.hasOwnProperty('custom_fields')) {  // update note_fields
 | 
			
		||||
            customFieldsChange(Object.keys(data.custom_fields), -1, req);
 | 
			
		||||
@@ -456,7 +507,8 @@ router.put('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
 | 
			
		||||
      if (_.keys(sample.notes).length > 0 && newNotes) {  // save new notes
 | 
			
		||||
        if (!await sampleRefCheck(sample, res, next)) return;
 | 
			
		||||
        if (sample.notes.hasOwnProperty('custom_fields') && Object.keys(sample.notes.custom_fields).length > 0) {  // new custom_fields
 | 
			
		||||
        // new custom_fields
 | 
			
		||||
        if (sample.notes.hasOwnProperty('custom_fields') && Object.keys(sample.notes.custom_fields).length > 0) {
 | 
			
		||||
          customFieldsChange(Object.keys(sample.notes.custom_fields), 1, req);
 | 
			
		||||
        }
 | 
			
		||||
        let data = await new NoteModel(sample.notes).save().catch(err => { return next(err)});  // save new notes
 | 
			
		||||
@@ -480,7 +532,7 @@ router.put('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.delete('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  SampleModel.findById(req.params.id).lean().exec(async (err, sampleData: any) => {  // check if id exists
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
@@ -488,14 +540,16 @@ router.delete('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
      return res.status(404).json({status: 'Not found'});
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    // only maintain and admin are allowed to edit other user's data
 | 
			
		||||
    if (sampleData.user_id.toString() !== req.authDetails.id && !req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
    // only dev and admin are allowed to edit other user's data
 | 
			
		||||
    if (sampleData.user_id.toString() !== req.authDetails.id && !req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
    await SampleModel.findByIdAndUpdate(req.params.id, {status:globals.status.deleted}).log(req).lean().exec(err => {  // set sample status
 | 
			
		||||
    // set sample status
 | 
			
		||||
    await SampleModel.findByIdAndUpdate(req.params.id, {status:globals.status.deleted}).log(req).lean().exec(err => {
 | 
			
		||||
      if (err) return next(err);
 | 
			
		||||
 | 
			
		||||
      // set status of associated measurements also to deleted
 | 
			
		||||
      MeasurementModel.updateMany({sample_id: mongoose.Types.ObjectId(req.params.id)}, {status: -1}).log(req).lean().exec(err => {
 | 
			
		||||
      MeasurementModel.updateMany({sample_id: mongoose.Types.ObjectId(req.params.id)}, {status: -1})
 | 
			
		||||
        .log(req).lean().exec(err => {
 | 
			
		||||
        if (err) return next(err);
 | 
			
		||||
 | 
			
		||||
        if (sampleData.note_id !== null) {  // handle notes
 | 
			
		||||
@@ -516,16 +570,17 @@ router.delete('/sample/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/sample/number/:number', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  SampleModel.findOne({number: req.params.number}).populate('material_id').populate('user_id', 'name').populate('note_id').exec(async (err, sampleData: any) => {
 | 
			
		||||
  SampleModel.findOne({number: req.params.number}).populate('material_id').populate('user_id', 'name')
 | 
			
		||||
    .populate('note_id').exec(async (err, sampleData: any) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
    await sampleReturn(sampleData, req, res, next);
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/sample/restore/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  SampleModel.findByIdAndUpdate(req.params.id, {status: globals.status.new}).log(req).lean().exec((err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
@@ -538,47 +593,34 @@ router.put('/sample/restore/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/sample/validate/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  SampleModel.findById(req.params.id).lean().exec((err, data: any) => {
 | 
			
		||||
  SampleModel.findByIdAndUpdate(req.params.id, {status: globals.status.validated}).log(req).lean().exec((err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
 | 
			
		||||
    if (!data) {
 | 
			
		||||
      return res.status(404).json({status: 'Not found'});
 | 
			
		||||
    }
 | 
			
		||||
    if (Object.keys(data.condition).length === 0) {
 | 
			
		||||
      return res.status(400).json({status: 'Sample without condition cannot be valid'});
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    MeasurementModel.find({sample_id: mongoose.Types.ObjectId(req.params.id)}).lean().exec((err, data) => {
 | 
			
		||||
      if (err) return next(err);
 | 
			
		||||
 | 
			
		||||
      if (data.length === 0) {
 | 
			
		||||
        return res.status(400).json({status: 'Sample without measurements cannot be valid'});
 | 
			
		||||
      }
 | 
			
		||||
 | 
			
		||||
      SampleModel.findByIdAndUpdate(req.params.id, {status: globals.status.validated}).log(req).lean().exec(err => {
 | 
			
		||||
        if (err) return next(err);
 | 
			
		||||
        res.json({status: 'OK'});
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    res.json({status: 'OK'});
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.post('/sample/new', async (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  if (!req.body.hasOwnProperty('condition')) {  // add empty condition if not specified
 | 
			
		||||
    req.body.condition = {};
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  const {error, value: sample} = SampleValidate.input(req.body, 'new' + (req.authDetails.level === 'admin' ? '-admin' : ''));
 | 
			
		||||
  const {error, value: sample} =
 | 
			
		||||
    SampleValidate.input(req.body, 'new' + (req.authDetails.level === 'admin' ? '-admin' : ''));
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
 | 
			
		||||
  if (!await materialCheck(sample, res, next)) return;
 | 
			
		||||
  if (!await sampleRefCheck(sample, res, next)) return;
 | 
			
		||||
 | 
			
		||||
  if (sample.notes.hasOwnProperty('custom_fields') && Object.keys(sample.notes.custom_fields).length > 0) {  // new custom_fields
 | 
			
		||||
  // new custom_fields
 | 
			
		||||
  if (sample.notes.hasOwnProperty('custom_fields') && Object.keys(sample.notes.custom_fields).length > 0) {
 | 
			
		||||
    customFieldsChange(Object.keys(sample.notes.custom_fields), 1, req);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
@@ -611,25 +653,31 @@ router.post('/sample/new', async (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/sample/notes/fields', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'all')) return;
 | 
			
		||||
 | 
			
		||||
  NoteFieldModel.find({}).lean().exec((err, data) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
    res.json(_.compact(data.map(e => NoteFieldValidate.output(e))));  // validate all and filter null values from validation errors
 | 
			
		||||
    // validate all and filter null values from validation errors
 | 
			
		||||
    res.json(_.compact(data.map(e => NoteFieldValidate.output(e))));
 | 
			
		||||
  })
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
module.exports = router;
 | 
			
		||||
 | 
			
		||||
// store the highest generated number for each location to avoid duplicate numbers
 | 
			
		||||
const numberBuffer: {[location: string]: number} = {};
 | 
			
		||||
 | 
			
		||||
async function numberGenerate (sample, req, res, next) {  // generate number in format Location32, returns false on error
 | 
			
		||||
// generate number in format Location32, returns false on error
 | 
			
		||||
async function numberGenerate (sample, req, res, next) {
 | 
			
		||||
  const sampleData = await SampleModel
 | 
			
		||||
    .aggregate([
 | 
			
		||||
      {$match: {number: new RegExp('^' + req.authDetails.location + '[0-9]+$', 'm')}},
 | 
			
		||||
      // {$addFields: {number2: {$toDecimal: {$arrayElemAt: [{$split: [{$arrayElemAt: [{$split: ['$number', 'Rng']}, 1]}, '_']}, 0]}}}},  // not working with MongoDb 3.6
 | 
			
		||||
      // {$addFields: {number2: {$toDecimal: {$arrayElemAt: [{$split: [{$arrayElemAt:
 | 
			
		||||
      //   [{$split: ['$number', 'Rng']}, 1]}, '_']}, 0]}}}},  // not working with MongoDb 3.6
 | 
			
		||||
      {$addFields: {sortNumber: {$let: {
 | 
			
		||||
        vars: {tmp: {$concat: ['000000000000000000000000000000', {$arrayElemAt: [{$split: [{$arrayElemAt: [{$split: ['$number', 'Rng']}, 1]}, '_']}, 0]}]}},
 | 
			
		||||
        vars: {tmp: {$concat: ['000000000000000000000000000000',
 | 
			
		||||
              {$arrayElemAt: [{$split: [{$arrayElemAt: [{$split: ['$number', 'Rng']}, 1]}, '_']}, 0]}]}},
 | 
			
		||||
        in: {$substrCP: ['$$tmp', {$subtract: [{$strLenCP: '$$tmp'}, 30]}, {$strLenCP: '$$tmp'}]}
 | 
			
		||||
      }}}},
 | 
			
		||||
      {$sort: {sortNumber: -1}},
 | 
			
		||||
@@ -638,11 +686,18 @@ async function numberGenerate (sample, req, res, next) {  // generate number in
 | 
			
		||||
    .exec()
 | 
			
		||||
    .catch(err => next(err));
 | 
			
		||||
  if (sampleData instanceof Error) return false;
 | 
			
		||||
  return req.authDetails.location + (sampleData[0] ? Number(sampleData[0].number.replace(/[^0-9]+/g, '')) + 1 : 1);
 | 
			
		||||
  let number = (sampleData[0] ? Number(sampleData[0].number.replace(/[^0-9]+/g, '')) : 0);
 | 
			
		||||
  if (numberBuffer[req.authDetails.location] && numberBuffer[req.authDetails.location] >= number) {
 | 
			
		||||
    number = numberBuffer[req.authDetails.location];
 | 
			
		||||
  }
 | 
			
		||||
  number ++;
 | 
			
		||||
  numberBuffer[req.authDetails.location] = number;
 | 
			
		||||
  return req.authDetails.location + number;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
async function numberCheck(sample, res, next) {
 | 
			
		||||
  const sampleData = await SampleModel.findOne({number: sample.number}).lean().exec().catch(err => {next(err); return false;});
 | 
			
		||||
  const sampleData = await SampleModel.findOne({number: sample.number})
 | 
			
		||||
    .lean().exec().catch(err => {next(err); return false;});
 | 
			
		||||
  if (sampleData) {  // found entry with sample number
 | 
			
		||||
    res.status(400).json({status: 'Sample number already taken'});
 | 
			
		||||
    return false
 | 
			
		||||
@@ -650,7 +705,8 @@ async function numberCheck(sample, res, next) {
 | 
			
		||||
  return true;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
async function materialCheck (sample, res, next, id = sample.material_id) {  // validate material_id and color, returns false if invalid
 | 
			
		||||
// validate material_id and color, returns false if invalid
 | 
			
		||||
async function materialCheck (sample, res, next, id = sample.material_id) {
 | 
			
		||||
  const materialData = await MaterialModel.findById(id).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
  if (materialData instanceof Error) return false;
 | 
			
		||||
  if (!materialData) {  // could not find material_id
 | 
			
		||||
@@ -660,12 +716,14 @@ async function materialCheck (sample, res, next, id = sample.material_id) {  //
 | 
			
		||||
  return true;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
async function conditionCheck (condition, param, res, next, checkVersion = true) {  // validate treatment template, returns false if invalid, otherwise template data
 | 
			
		||||
// validate treatment template, returns false if invalid, otherwise template data
 | 
			
		||||
async function conditionCheck (condition, param, res, next, checkVersion = true) {
 | 
			
		||||
  if (!condition.condition_template || !IdValidate.valid(condition.condition_template)) {  // template id not found
 | 
			
		||||
    res.status(400).json({status: 'Condition template not available'});
 | 
			
		||||
    return false;
 | 
			
		||||
  }
 | 
			
		||||
  const conditionData = await ConditionTemplateModel.findById(condition.condition_template).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
  const conditionData = await ConditionTemplateModel.findById(condition.condition_template)
 | 
			
		||||
    .lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
  if (conditionData instanceof Error) return false;
 | 
			
		||||
  if (!conditionData) {  // template not found
 | 
			
		||||
    res.status(400).json({status: 'Condition template not available'});
 | 
			
		||||
@@ -674,7 +732,8 @@ async function conditionCheck (condition, param, res, next, checkVersion = true)
 | 
			
		||||
 | 
			
		||||
  if (checkVersion) {
 | 
			
		||||
    // get all template versions and check if given is latest
 | 
			
		||||
    const conditionVersions = await ConditionTemplateModel.find({first_id: conditionData.first_id}).sort({version: -1}).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
    const conditionVersions = await ConditionTemplateModel.find({first_id: conditionData.first_id})
 | 
			
		||||
      .sort({version: -1}).lean().exec().catch(err => next(err)) as any;
 | 
			
		||||
    if (conditionVersions instanceof Error) return false;
 | 
			
		||||
    if (condition.condition_template !== conditionVersions[0]._id.toString()) {  // template not latest
 | 
			
		||||
      res.status(400).json({status: 'Old template version not allowed'});
 | 
			
		||||
@@ -683,14 +742,16 @@ async function conditionCheck (condition, param, res, next, checkVersion = true)
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // validate parameters
 | 
			
		||||
  const {error, value: ignore} = ParametersValidate.input(_.omit(condition, 'condition_template'), conditionData.parameters, param);
 | 
			
		||||
  const {error, value: ignore} =
 | 
			
		||||
    ParametersValidate.input(_.omit(condition, 'condition_template'), conditionData.parameters, param);
 | 
			
		||||
  if (error) {res400(error, res); return false;}
 | 
			
		||||
  return conditionData;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
function sampleRefCheck (sample, res, next) {  // validate sample_references, resolves false for invalid reference
 | 
			
		||||
  return new Promise(resolve => {
 | 
			
		||||
    if (sample.notes.hasOwnProperty('sample_references') && sample.notes.sample_references.length > 0) {  // there are sample_references
 | 
			
		||||
    // there are sample_references
 | 
			
		||||
    if (sample.notes.hasOwnProperty('sample_references') && sample.notes.sample_references.length > 0) {
 | 
			
		||||
      let referencesCount = sample.notes.sample_references.length;  // count to keep track of running async operations
 | 
			
		||||
 | 
			
		||||
      sample.notes.sample_references.forEach(reference => {
 | 
			
		||||
@@ -715,7 +776,8 @@ function sampleRefCheck (sample, res, next) {  // validate sample_references, re
 | 
			
		||||
 | 
			
		||||
function customFieldsChange (fields, amount, req) {  // update custom_fields and respective quantities
 | 
			
		||||
  fields.forEach(field => {
 | 
			
		||||
    NoteFieldModel.findOneAndUpdate({name: field}, {$inc: {qty: amount}} as any, {new: true}).log(req).lean().exec((err, data: any) => {  // check if field exists
 | 
			
		||||
    NoteFieldModel.findOneAndUpdate({name: field}, {$inc: {qty: amount}} as any, {new: true})
 | 
			
		||||
      .log(req).lean().exec((err, data: any) => {  // check if field exists
 | 
			
		||||
      if (err) return console.error(err);
 | 
			
		||||
      if (!data) {  // new field
 | 
			
		||||
        new NoteFieldModel({name: field, qty: 1}).save((err, data) => {
 | 
			
		||||
@@ -735,11 +797,27 @@ function customFieldsChange (fields, amount, req) {  // update custom_fields and
 | 
			
		||||
function sortQuery(filters, sortKeys, sortStartValue) {  // sortKeys = ['primary key', 'secondary key']
 | 
			
		||||
  if (filters['from-id']) {  // from-id specified
 | 
			
		||||
    if ((filters['to-page'] === 0 && filters.sort[1] === 1) || (filters.sort[1] * filters['to-page'] > 0)) {  // asc
 | 
			
		||||
      return [{$match: {$or: [{[sortKeys[0]]: {$gt: sortStartValue}}, {$and: [{[sortKeys[0]]: sortStartValue}, {[sortKeys[1]]: {$gte: new mongoose.Types.ObjectId(filters['from-id'])}}]}]}},
 | 
			
		||||
        {$sort: {[sortKeys[0]]: 1, _id: 1}}];
 | 
			
		||||
      return [
 | 
			
		||||
        {$match: {$or: [
 | 
			
		||||
          {[sortKeys[0]]: {$gt: sortStartValue}},
 | 
			
		||||
          {$and: [
 | 
			
		||||
            {[sortKeys[0]]: sortStartValue},
 | 
			
		||||
            {[sortKeys[1]]: {$gte: new mongoose.Types.ObjectId(filters['from-id'])}}
 | 
			
		||||
          ]}
 | 
			
		||||
        ]}},
 | 
			
		||||
        {$sort: {[sortKeys[0]]: 1, _id: 1}}
 | 
			
		||||
      ];
 | 
			
		||||
    } else {
 | 
			
		||||
      return [{$match: {$or: [{[sortKeys[0]]: {$lt: sortStartValue}}, {$and: [{[sortKeys[0]]: sortStartValue}, {[sortKeys[1]]: {$lte: new mongoose.Types.ObjectId(filters['from-id'])}}]}]}},
 | 
			
		||||
        {$sort: {[sortKeys[0]]: -1, _id: -1}}];
 | 
			
		||||
      return [
 | 
			
		||||
        {$match: {$or: [
 | 
			
		||||
          {[sortKeys[0]]: {$lt: sortStartValue}},
 | 
			
		||||
          {$and: [
 | 
			
		||||
            {[sortKeys[0]]: sortStartValue},
 | 
			
		||||
            {[sortKeys[1]]: {$lte: new mongoose.Types.ObjectId(filters['from-id'])}}
 | 
			
		||||
          ]}
 | 
			
		||||
        ]}},
 | 
			
		||||
        {$sort: {[sortKeys[0]]: -1, _id: -1}}
 | 
			
		||||
      ];
 | 
			
		||||
    }
 | 
			
		||||
  } else {  // sort from beginning
 | 
			
		||||
    return [{$sort: {[sortKeys[0]]: filters.sort[1], [sortKeys[1]]: filters.sort[1]}}];  // set _id as secondary sort
 | 
			
		||||
@@ -775,30 +853,57 @@ function filterQueries (filters) {
 | 
			
		||||
      return {[e.field]: {['$in']: [new RegExp(e.values[0])]}};
 | 
			
		||||
    }
 | 
			
		||||
    else {
 | 
			
		||||
      return {[e.field]: {['$' + e.mode]: (e.mode.indexOf('in') >= 0 ? e.values : e.values[0])}};  // add filter criteria as {field: {$mode: value}}, only use first value when mode is not in/nin
 | 
			
		||||
      // add filter criteria as {field: {$mode: value}}, only use first value when mode is not in/nin
 | 
			
		||||
      return {[e.field]: {['$' + e.mode]: (e.mode.indexOf('in') >= 0 ? e.values : e.values[0])}};
 | 
			
		||||
    }
 | 
			
		||||
  });
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
// add measurements as property [template.name], if one result, array is reduced to direct values
 | 
			
		||||
function addMeasurements(queryPtr, template) {
 | 
			
		||||
  queryPtr.push(
 | 
			
		||||
    {$addFields: {[template.name]: {$let: {vars: {
 | 
			
		||||
      arr: {$filter: {
 | 
			
		||||
        input: '$measurements', cond: {$eq: ['$$this.measurement_template', mongoose.Types.ObjectId(template._id)]}
 | 
			
		||||
      }}},
 | 
			
		||||
      in: {$cond: [{$lte: [{$size: '$$arr'}, 1]}, {$arrayElemAt: ['$$arr', 0]}, '$$arr']}
 | 
			
		||||
    }}}},
 | 
			
		||||
    {$addFields: {[template.name]: {$cond: [
 | 
			
		||||
      '$' + template.name + '.values',
 | 
			
		||||
      '$' + template.name + '.values',
 | 
			
		||||
      template.parameters.reduce((s, e) => {s[e.name] = null; return s;}, {})
 | 
			
		||||
    ]}}}
 | 
			
		||||
  );
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
function dateToOId (date) {  // convert date to ObjectId
 | 
			
		||||
  return mongoose.Types.ObjectId(Math.floor(date / 1000).toString(16) + '0000000000000000');
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
async function sampleReturn (sampleData, req, res, next) {
 | 
			
		||||
  if (sampleData) {
 | 
			
		||||
    console.log(sampleData);
 | 
			
		||||
    await sampleData.populate('material_id.group_id').populate('material_id.supplier_id').execPopulate().catch(err => next(err));
 | 
			
		||||
    await sampleData.populate('material_id.group_id').populate('material_id.supplier_id')
 | 
			
		||||
      .execPopulate().catch(err => next(err));
 | 
			
		||||
    if (sampleData instanceof Error) return;
 | 
			
		||||
    sampleData = sampleData.toObject();
 | 
			
		||||
 | 
			
		||||
    if (sampleData.status === globals.status.deleted && !req.auth(res, ['maintain', 'admin'], 'all')) return;  // deleted samples only available for maintain/admin
 | 
			
		||||
    // deleted samples only available for dev/admin
 | 
			
		||||
    if (sampleData.status === globals.status.deleted && !req.auth(res, ['dev', 'admin'], 'all')) return;
 | 
			
		||||
    sampleData.material = sampleData.material_id;  // map data to right keys
 | 
			
		||||
    sampleData.material.group = sampleData.material.group_id.name;
 | 
			
		||||
    sampleData.material.supplier = sampleData.material.supplier_id.name;
 | 
			
		||||
    sampleData.user = sampleData.user_id.name;
 | 
			
		||||
    sampleData.notes = sampleData.note_id ? sampleData.note_id : {};
 | 
			
		||||
    MeasurementModel.find({sample_id: sampleData._id, status: {$ne: globals.status.deleted}}).lean().exec((err, data) => {
 | 
			
		||||
    MeasurementModel.find({sample_id: sampleData._id, status: {$ne: globals.status.deleted}})
 | 
			
		||||
      .lean().exec((err, data) => {
 | 
			
		||||
      sampleData.measurements = data;
 | 
			
		||||
      if (['dev', 'admin'].indexOf(req.authDetails.level) < 0) {  // strip dpt values if not dev or admin
 | 
			
		||||
        sampleData.measurements.forEach(measurement => {
 | 
			
		||||
          if (measurement.values.dpt) {
 | 
			
		||||
            delete measurement.values.dpt;
 | 
			
		||||
          }
 | 
			
		||||
        });
 | 
			
		||||
      }
 | 
			
		||||
      res.json(SampleValidate.output(sampleData, 'details'));
 | 
			
		||||
    });
 | 
			
		||||
  }
 | 
			
		||||
 
 | 
			
		||||
@@ -4,6 +4,7 @@ import TemplateConditionModel from '../models/condition_template';
 | 
			
		||||
import TemplateMeasurementModel from '../models/measurement_template';
 | 
			
		||||
import TestHelper from "../test/helper";
 | 
			
		||||
 | 
			
		||||
// TODO: method to return only latest template versions -> rework frontend accordingly
 | 
			
		||||
 | 
			
		||||
describe('/template', () => {
 | 
			
		||||
  let server;
 | 
			
		||||
 
 | 
			
		||||
@@ -15,17 +15,18 @@ import db from '../db';
 | 
			
		||||
const router = express.Router();
 | 
			
		||||
 | 
			
		||||
router.get('/template/:collection(measurements|conditions|materials)', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  req.params.collection = req.params.collection.replace(/s$/g, '');  // remove trailing s
 | 
			
		||||
  model(req).find({}).lean().exec((err, data) => {
 | 
			
		||||
     if (err) next (err);
 | 
			
		||||
     res.json(_.compact(data.map(e => TemplateValidate.output(e))));  // validate all and filter null values from validation errors
 | 
			
		||||
    // validate all and filter null values from validation errors
 | 
			
		||||
     res.json(_.compact(data.map(e => TemplateValidate.output(e))));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/template/:collection(measurement|condition|material)/' + IdValidate.parameter(), (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  model(req).findById(req.params.id).lean().exec((err, data) => {
 | 
			
		||||
    if (err) next (err);
 | 
			
		||||
@@ -38,8 +39,9 @@ router.get('/template/:collection(measurement|condition|material)/' + IdValidate
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/template/:collection(measurement|condition|material)/' + IdValidate.parameter(), async (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
router.put('/template/:collection(measurement|condition|material)/' + IdValidate.parameter(),
 | 
			
		||||
  async (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  const {error, value: template} = TemplateValidate.input(req.body, 'change');
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
@@ -51,7 +53,8 @@ router.put('/template/:collection(measurement|condition|material)/' + IdValidate
 | 
			
		||||
    return res.status(404).json({status: 'Not found'});
 | 
			
		||||
  }
 | 
			
		||||
  // find latest version
 | 
			
		||||
  const templateData = await model(req).findOne({first_id: templateRef.first_id}).sort({version: -1}).lean().exec().catch(err => {next(err);}) as any;
 | 
			
		||||
  const templateData = await model(req).findOne({first_id: templateRef.first_id}).sort({version: -1})
 | 
			
		||||
    .lean().exec().catch(err => {next(err);}) as any;
 | 
			
		||||
  if (templateData instanceof Error) return;
 | 
			
		||||
  if (!templateData) {
 | 
			
		||||
    return res.status(404).json({status: 'Not found'});
 | 
			
		||||
@@ -59,7 +62,8 @@ router.put('/template/:collection(measurement|condition|material)/' + IdValidate
 | 
			
		||||
 | 
			
		||||
  if (!_.isEqual(_.pick(templateData, _.keys(template)), template)) {  // data was changed
 | 
			
		||||
    template.version = templateData.version + 1;  // increase version
 | 
			
		||||
    await new (model(req))(_.assign({}, _.omit(templateData, ['_id', '__v']), template)).save((err, data) => {  // save new template, fill with old properties
 | 
			
		||||
    // save new template, fill with old properties
 | 
			
		||||
    await new (model(req))(_.assign({}, _.omit(templateData, ['_id', '__v']), template)).save((err, data) => {
 | 
			
		||||
      if (err) next (err);
 | 
			
		||||
      db.log(req, req.params.collection + '_templates', {_id: data._id}, data.toObject());
 | 
			
		||||
      res.json(TemplateValidate.output(data.toObject()));
 | 
			
		||||
@@ -71,7 +75,7 @@ router.put('/template/:collection(measurement|condition|material)/' + IdValidate
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.post('/template/:collection(measurement|condition|material)/new', async (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['maintain', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  const {error, value: template} = TemplateValidate.input(req.body, 'new');
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
 
 | 
			
		||||
@@ -564,7 +564,7 @@ describe('/user', () => {
 | 
			
		||||
        auth: {basic: 'admin'},
 | 
			
		||||
        httpStatus: 400,
 | 
			
		||||
        req: {email: 'john.doe@bosch.com', name: 'johndoe', pass: 'Abc123!#', level: 'xxx', location: 'Rng', device_name: 'Alpha II'},
 | 
			
		||||
        res: {status: 'Invalid body format', details: '"level" must be one of [read, write, maintain, dev, admin]'}
 | 
			
		||||
        res: {status: 'Invalid body format', details: '"level" must be one of [read, write, dev, admin]'}
 | 
			
		||||
      });
 | 
			
		||||
    });
 | 
			
		||||
    it('rejects an invalid email address', done => {
 | 
			
		||||
 
 | 
			
		||||
@@ -16,12 +16,15 @@ router.get('/users', (req, res) => {
 | 
			
		||||
  if (!req.auth(res, ['admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  UserModel.find({}).lean().exec(  (err, data:any) => {
 | 
			
		||||
    res.json(_.compact(data.map(e => UserValidate.output(e))));  // validate all and filter null values from validation errors
 | 
			
		||||
    // validate all and filter null values from validation errors
 | 
			
		||||
    res.json(_.compact(data.map(e => UserValidate.output(e))));
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/user:username([/](?!key|new).?*|/?)', (req, res, next) => {  // this path matches /user, /user/ and /user/xxx, but not /user/key or user/new. See https://forbeslindesay.github.io/express-route-tester/ for the generated regex
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
// this path matches /user, /user/ and /user/xxx, but not /user/key or user/new.
 | 
			
		||||
// See https://forbeslindesay.github.io/express-route-tester/ for the generated regex
 | 
			
		||||
router.get('/user:username([/](?!key|new).?*|/?)', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  const username = getUsername(req, res);
 | 
			
		||||
  if (!username) return;
 | 
			
		||||
@@ -36,13 +39,15 @@ router.get('/user:username([/](?!key|new).?*|/?)', (req, res, next) => {  // thi
 | 
			
		||||
  });
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.put('/user:username([/](?!key|new).?*|/?)', async (req, res, next) => {  // this path matches /user, /user/ and /user/xxx, but not /user/key or user/new
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
// this path matches /user, /user/ and /user/xxx, but not /user/key or user/new
 | 
			
		||||
router.put('/user:username([/](?!key|new).?*|/?)', async (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  const username = getUsername(req, res);
 | 
			
		||||
  if (!username) return;
 | 
			
		||||
 | 
			
		||||
  const {error, value: user} = UserValidate.input(req.body, 'change' + (req.authDetails.level === 'admin'? 'admin' : ''));
 | 
			
		||||
  const {error, value: user} = UserValidate.input(req.body, 'change' +
 | 
			
		||||
    (req.authDetails.level === 'admin'? 'admin' : ''));
 | 
			
		||||
  if (error) return res400(error, res);
 | 
			
		||||
 | 
			
		||||
  if (user.hasOwnProperty('pass')) {
 | 
			
		||||
@@ -66,8 +71,10 @@ router.put('/user:username([/](?!key|new).?*|/?)', async (req, res, next) => {
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
// TODO: only possible if no data is linked to user, otherwise change status, etc.
 | 
			
		||||
router.delete('/user:username([/](?!key|new).?*|/?)', (req, res, next) => {  // this path matches /user, /user/ and /user/xxx, but not /user/key or user/new. See https://forbeslindesay.github.io/express-route-tester/ for the generated regex
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
// this path matches /user, /user/ and /user/xxx, but not /user/key or user/new.
 | 
			
		||||
// See https://forbeslindesay.github.io/express-route-tester/ for the generated regex
 | 
			
		||||
router.delete('/user:username([/](?!key|new).?*|/?)', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  const username = getUsername(req, res);
 | 
			
		||||
  if (!username) return;
 | 
			
		||||
@@ -84,7 +91,7 @@ router.delete('/user:username([/](?!key|new).?*|/?)', (req, res, next) => {  //
 | 
			
		||||
});
 | 
			
		||||
 | 
			
		||||
router.get('/user/key', (req, res, next) => {
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'maintain', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
  if (!req.auth(res, ['read', 'write', 'dev', 'admin'], 'basic')) return;
 | 
			
		||||
 | 
			
		||||
  UserModel.findOne({name: req.authDetails.username}).lean().exec(  (err, data:any) => {
 | 
			
		||||
    if (err) return next(err);
 | 
			
		||||
@@ -126,7 +133,10 @@ router.post('/user/passreset', (req, res, next) => {
 | 
			
		||||
          if (err) return next(err);
 | 
			
		||||
 | 
			
		||||
          // send email
 | 
			
		||||
          mail(data[0].email, 'Your new password for the DFOP database', 'Hi, <br><br> You requested to reset your password.<br>Your new password is:<br><br>' + newPass + '<br><br>If you did not request a password reset, talk to the sysadmin quickly!<br><br>Have a nice day.<br><br>The DFOP team', err => {
 | 
			
		||||
          mail(data[0].email, 'Your new password for the DeFinMa database',
 | 
			
		||||
            'Hi, <br><br> You requested to reset your password.<br>Your new password is:<br><br>' + newPass + '' +
 | 
			
		||||
            '<br><br>If you did not request a password reset, talk to the sysadmin quickly!<br><br>Have a nice day.' +
 | 
			
		||||
            '<br><br>The DeFinMa team', err => {
 | 
			
		||||
            if (err) return next(err);
 | 
			
		||||
            res.json({status: 'OK'});
 | 
			
		||||
          });
 | 
			
		||||
 
 | 
			
		||||
@@ -34,8 +34,12 @@ export default class MeasurementValidate {
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static output (data) {  // validate output and strip unwanted properties, returns null if not valid
 | 
			
		||||
  static output (data, req) {  // validate output and strip unwanted properties, returns null if not valid
 | 
			
		||||
    data = IdValidate.stringify(data);
 | 
			
		||||
    // spectral data not allowed for read/write users
 | 
			
		||||
    if (['dev', 'admin'].indexOf(req.authDetails.level) < 0 && data.values.dpt) {
 | 
			
		||||
      delete data.values.dpt;
 | 
			
		||||
    }
 | 
			
		||||
    const {value, error} = Joi.object({
 | 
			
		||||
      _id: IdValidate.get(),
 | 
			
		||||
      sample_id: IdValidate.get(),
 | 
			
		||||
 
 | 
			
		||||
@@ -15,7 +15,7 @@ export default class SampleValidate {
 | 
			
		||||
      .allow(''),
 | 
			
		||||
 | 
			
		||||
    type: Joi.string()
 | 
			
		||||
      .max(128),
 | 
			
		||||
      .valid('granulate', 'part', 'tension rod'),
 | 
			
		||||
 | 
			
		||||
    batch: Joi.string()
 | 
			
		||||
      .max(128)
 | 
			
		||||
@@ -116,7 +116,8 @@ export default class SampleValidate {
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static output (data, param = 'refs+added', additionalParams = []) {  // validate output and strip unwanted properties, returns null if not valid
 | 
			
		||||
  // validate output and strip unwanted properties, returns null if not valid
 | 
			
		||||
  static output (data, param = 'refs+added', additionalParams = []) {
 | 
			
		||||
    if (param === 'refs+added') {
 | 
			
		||||
      param = 'refs';
 | 
			
		||||
      data.added = data._id.getTimestamp();
 | 
			
		||||
@@ -169,12 +170,16 @@ export default class SampleValidate {
 | 
			
		||||
      if (filterValidation.error) return filterValidation;
 | 
			
		||||
      try {
 | 
			
		||||
        for (let i in data.filters) {
 | 
			
		||||
          // data.filters[i] = JSON.parse(decodeURIComponent(data.filters[i]));
 | 
			
		||||
          data.filters[i] = JSON.parse(data.filters[i]);
 | 
			
		||||
          data.filters[i].values = data.filters[i].values.map(e => {  // validate filter values
 | 
			
		||||
            let validator;
 | 
			
		||||
            let field = data.filters[i].field
 | 
			
		||||
            if (/material\./.test(field)) {  // select right validation model
 | 
			
		||||
              validator = MaterialValidate.outputV().append({number: Joi.string().max(128).allow(''), properties: Joi.alternatives().try(Joi.number(), Joi.string().max(128))});
 | 
			
		||||
              validator = MaterialValidate.outputV().append({
 | 
			
		||||
                number: Joi.string().max(128).allow(''),
 | 
			
		||||
                properties: Joi.alternatives().try(Joi.number(), Joi.string().max(128))
 | 
			
		||||
              });
 | 
			
		||||
              field = field.replace('material.', '').split('.')[0];
 | 
			
		||||
            }
 | 
			
		||||
            else if (/measurements\./.test(field)) {
 | 
			
		||||
@@ -194,12 +199,12 @@ export default class SampleValidate {
 | 
			
		||||
              validator = Joi.object(this.sample);
 | 
			
		||||
            }
 | 
			
		||||
            const {value, error} = validator.validate({[field]: e});
 | 
			
		||||
            if (error) throw error;  // reject invalid values  // TODO: return exact error description, handle in frontend filters
 | 
			
		||||
            if (error) throw error;  // reject invalid values
 | 
			
		||||
            return value[field];
 | 
			
		||||
          });
 | 
			
		||||
        }
 | 
			
		||||
      }
 | 
			
		||||
      catch {
 | 
			
		||||
      catch (err) {
 | 
			
		||||
        return {error: {details: [{message: 'Invalid JSON string for filter parameter'}]}, value: null}
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
@@ -208,13 +213,22 @@ export default class SampleValidate {
 | 
			
		||||
      'from-id': IdValidate.get(),
 | 
			
		||||
      'to-page': Joi.number().integer(),
 | 
			
		||||
      'page-size': Joi.number().integer().min(1),
 | 
			
		||||
      sort: Joi.string().pattern(new RegExp('^(' + this.sortKeys.join('|').replace(/\./g, '\\.').replace(/\*/g, '.+') + ')-(asc|desc)$', 'm')).default('_id-asc'),
 | 
			
		||||
      sort: Joi.string().pattern(
 | 
			
		||||
        new RegExp('^(' + this.sortKeys.join('|').replace(/\./g, '\\.').replace(/\*/g, '.+') + ')-(asc|desc)$', 'm')
 | 
			
		||||
      ).default('_id-asc'),
 | 
			
		||||
      csv: Joi.boolean().default(false),
 | 
			
		||||
      fields: Joi.array().items(Joi.string().pattern(new RegExp('^(' + this.fieldKeys.join('|').replace(/\./g, '\\.').replace(/\*/g, '.+') + ')$', 'm'))).default(['_id','number','type','batch','material_id','color','condition','note_id','user_id','added']).messages({'string.pattern.base': 'Invalid field name'}),
 | 
			
		||||
      fields: Joi.array().items(Joi.string().pattern(
 | 
			
		||||
        new RegExp('^(' + this.fieldKeys.join('|').replace(/\./g, '\\.').replace(/\*/g, '.+') + ')$', 'm')
 | 
			
		||||
      )).default(['_id','number','type','batch','material_id','color','condition','note_id','user_id','added'])
 | 
			
		||||
        .messages({'string.pattern.base': 'Invalid field name'}),
 | 
			
		||||
      filters: Joi.array().items(Joi.object({
 | 
			
		||||
        mode: Joi.string().valid('eq', 'ne', 'lt', 'lte', 'gt', 'gte', 'in', 'nin', 'stringin'),
 | 
			
		||||
        field: Joi.string().pattern(new RegExp('^(' + this.fieldKeys.join('|').replace(/\./g, '\\.').replace(/\*/g, '.+') + ')$', 'm')).messages({'string.pattern.base': 'Invalid filter field name'}),
 | 
			
		||||
        values: Joi.array().items(Joi.alternatives().try(Joi.string().max(128), Joi.number(), Joi.boolean(), Joi.date().iso(), Joi.object())).min(1)
 | 
			
		||||
        field: Joi.string().pattern(
 | 
			
		||||
          new RegExp('^(' + this.fieldKeys.join('|').replace(/\./g, '\\.').replace(/\*/g, '.+') + ')$', 'm')
 | 
			
		||||
        ).messages({'string.pattern.base': 'Invalid filter field name'}),
 | 
			
		||||
        values: Joi.array().items(Joi.alternatives().try(
 | 
			
		||||
          Joi.string().max(128), Joi.number(), Joi.boolean(), Joi.date().iso(), Joi.object()
 | 
			
		||||
        )).min(1)
 | 
			
		||||
      })).default([])
 | 
			
		||||
    }).with('to-page', 'page-size').validate(data);
 | 
			
		||||
  }
 | 
			
		||||
 
 | 
			
		||||
@@ -1,7 +1,7 @@
 | 
			
		||||
import Joi from '@hapi/joi';
 | 
			
		||||
import IdValidate from './id';
 | 
			
		||||
 | 
			
		||||
// TODO: do not allow a . in the name
 | 
			
		||||
// TODO: do not allow a . in the name !!!
 | 
			
		||||
export default class TemplateValidate {
 | 
			
		||||
  private static template = {
 | 
			
		||||
    name: Joi.string()
 | 
			
		||||
 
 | 
			
		||||
@@ -99,7 +99,7 @@
 | 
			
		||||
      {
 | 
			
		||||
        "_id": {"$oid":"400000000000000000000007"},
 | 
			
		||||
        "number": "34",
 | 
			
		||||
        "type": "liquid",
 | 
			
		||||
        "type": "part",
 | 
			
		||||
        "color": "black",
 | 
			
		||||
        "batch": "",
 | 
			
		||||
        "condition": {},
 | 
			
		||||
 
 | 
			
		||||
@@ -29,7 +29,10 @@ export default class TestHelper {
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static beforeEach (server, done) {
 | 
			
		||||
    delete require.cache[require.resolve('../index')];  // prevent loading from cache
 | 
			
		||||
    // delete cached server code except models as these are needed in the testing files as well
 | 
			
		||||
    Object.keys(require.cache).filter(e => /API\\dist\\(?!(models|db|test))/.test(e)).forEach(key => {
 | 
			
		||||
      delete require.cache[key];  // prevent loading from cache
 | 
			
		||||
    });
 | 
			
		||||
    server = require('../index');
 | 
			
		||||
    db.drop(err => {  // reset database
 | 
			
		||||
      if (err) return done(err);
 | 
			
		||||
@@ -38,10 +41,13 @@ export default class TestHelper {
 | 
			
		||||
    return server
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static request (server, done, options) {  // options in form: {method, url, contentType, auth: {key/basic: 'name' or 'key'/{name, pass}}, httpStatus, req, res, default (set to false if you want to dismiss default .end handling)}
 | 
			
		||||
  // options in form: {method, url, contentType, auth: {key/basic: 'name' or 'key'/{name, pass}}, httpStatus, req, res,
 | 
			
		||||
  // default (set to false if you want to dismiss default .end handling)}
 | 
			
		||||
  static request (server, done, options) {
 | 
			
		||||
    let st = supertest(server);
 | 
			
		||||
    if (options.hasOwnProperty('auth') && options.auth.hasOwnProperty('key')) {  // resolve API key
 | 
			
		||||
      options.url += '?key=' + (this.auth.hasOwnProperty(options.auth.key)? this.auth[options.auth.key].key : options.auth.key);
 | 
			
		||||
      options.url += '?key=' +
 | 
			
		||||
        (this.auth.hasOwnProperty(options.auth.key)? this.auth[options.auth.key].key : options.auth.key);
 | 
			
		||||
    }
 | 
			
		||||
    switch (options.method) {  // http method
 | 
			
		||||
      case 'get':
 | 
			
		||||
@@ -91,10 +97,12 @@ export default class TestHelper {
 | 
			
		||||
        done();
 | 
			
		||||
      });
 | 
			
		||||
    }
 | 
			
		||||
    else if (options.hasOwnProperty('log')) {  // check changelog, takes log: {collection, skip, data/(dataAdd, dataIgn)}
 | 
			
		||||
    // check changelog, takes log: {collection, skip, data/(dataAdd, dataIgn)}
 | 
			
		||||
    else if (options.hasOwnProperty('log')) {
 | 
			
		||||
      return st.end(err => {
 | 
			
		||||
        if (err) return done (err);
 | 
			
		||||
        ChangelogModel.findOne({}).sort({_id: -1}).skip(options.log.skip? options.log.skip : 0).lean().exec((err, data) => {  // latest entry
 | 
			
		||||
        ChangelogModel.findOne({}).sort({_id: -1}).skip(options.log.skip? options.log.skip : 0)
 | 
			
		||||
          .lean().exec((err, data) => {  // latest entry
 | 
			
		||||
          if (err) return done(err);
 | 
			
		||||
          should(data).have.only.keys('_id', 'action', 'collectionName', 'conditions', 'data', 'user_id', '__v');
 | 
			
		||||
          should(data).have.property('action', options.method.toUpperCase() + ' ' + options.url);
 | 
			
		||||
 
 | 
			
		||||
		Reference in New Issue
	
	Block a user